| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0725 |
|---|
| Symbol | |
|---|
| ID | 3521752 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 727671 |
|---|
| End bp | 728213 |
|---|
| Gene Length | 543 bp |
|---|
| Protein Length | 180 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637283190 |
|---|
| Product | sigma-70 family RNA polymerase sigma factor |
|---|
| Protein accession | YP_267475 |
|---|
| Protein GI | 71281281 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGATTGTT ATTCAGTAGA GCCGCAGGTT GTGGATCATC AAGTCGTATT TACCCAGTGG
ATGACGGAGC ATGAAAAATT GCTACGTCAT ATCATTACGG GTTTTGAAGC AAAAATTGCT
ATTCAAGATG AGCTATTTCA AGAGATCGCG TTAAATATTT GGCGAGCTTT ACCTCAGTTT
CGTCAAGATG CAGCGGTAAA AACCTTTGTT GCACGTATTG CTCACAATGT ATTAGCGACA
CACGTTGCTA AAGCAGTCAA AACCATTAAA GCGGATCAAG ACTTAAGTAA CATCAGTATG
GAGGTTGAAG AGGATGAACG TCAACCTACA CCTTATCAAT CACTTAACCA GAGTCAACGA
CAACAAAAGC TAGCCGAAGC TATTCGTCAG CTAAAACTTG AGCAACAACA GGTGATAACA
CTCGCATTAG AAGGCATGAG TTATCAAGAG ATTGCAGACG TTTTAGCCAT TACAACAAAC
CTTGTTGGTG TACGATTACA GAGAGCTAAA CAAGTCTTAT CTCAAATGTT GGAGGCCGTA
TGA
|
|---|
| Protein sequence | MDCYSVEPQV VDHQVVFTQW MTEHEKLLRH IITGFEAKIA IQDELFQEIA LNIWRALPQF
RQDAAVKTFV ARIAHNVLAT HVAKAVKTIK ADQDLSNISM EVEEDERQPT PYQSLNQSQR
QQKLAEAIRQ LKLEQQQVIT LALEGMSYQE IADVLAITTN LVGVRLQRAK QVLSQMLEAV
|
|---|
| |