| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0674 |
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| Symbol | |
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| ID | 3518933 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 675188 |
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| End bp | 677554 |
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| Gene Length | 2367 bp |
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| Protein Length | 788 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637283139 |
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| Product | sensory box protein |
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| Protein accession | YP_267424 |
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| Protein GI | 71278443 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTTCTCGT ATATGGATAC TAGCAGTTTT ATTGCCCTAC TCTACAATGC AGCACTCCTA
ATTTCTTTAG GCGTCATTTA TGATGCGCTG AAGCTTGAAT CAATCAAGAA TAAAAAGCTA
CGCGACCTAA TCTCTGGATT ATTGGTCGGT ATGCTCGGCC TTGCAGTGAT GAACACTTCA
TGGGAAATGG CCCCTGGCAT GTTCTTTGAC ACGCGATGGG TGCTGATCAG TCTTTGTGGT
TTGTTTTTTG GCCTGGTACC AACCCTAATT GCCGGAGCTA TGATGGTTAG CTTAAGGCTT
CATATAGGCG GGGCAGGAAT TCTAGTCGGC TCATTATGTG TCATCATCCC TGGCAGTATT
GGTTGTTTAT TTGCCATTAT ATTAAAACGA AAAAACCTGA AGCTTGATTG GTTCAAGCTA
TATTCTTTTG GCATGCTGAT TCAAATCACG GTGTTGGGTT GTATGTTACT AATGCCCGAA
CATTTACGTT ACAAAGTTAT AGGCGCAGTT ATACAGCCAG TAATCGTCGT TTTCCCTGTA
TGTACCATGC TAGTGGGTTT GATACTAAGG CGTCAACGTG ATCGCAGAAA ATCTGAATAT
GACTTAACTG AAAGCCAAAA ATTGTTAAAC AGAGAGCAAA GCTTGATGAG AGGTTTGATT
GGCTCATTAC CTGATTTAAT ATCTTTTAAA GATGTGCAAG GACGCTATCT TGGCTGCAAT
CATGCTTTTG AACAATTCGT TGGCCTGACA GAGCAAGAAC TGAAAGGAAA AATGGATCAA
GAGCTAAAGG GGAATTTTAA ACCTTCTGAT ATCGCAGGGC TTGATGAGCA AGAAATTATT
GCCAGTGGTA AAGTGTACAG TCAAGATGAA TGGGTAGTTT ACCCTGACGG TAGCAAAGTA
TTACATGAAA CCATTAAGAA AACTTTTGAT GGTTTTGATG GCACTCGTTA TGGTTTAATG
AGCGTTAGCA GAGACATCAC TGAACGCAAA AATCATGAAG ATCAAATTCA ACGACTCGCC
TTTTATGACT CATTAACACA ATTACCTAAT CGCAGGATGT TGCAAGACAG ATTGCAACTT
CTAGTGACCA CTAGTGCTCG TGACGAACGA TTCAACGCAC TTTTTTTCAT CGACCTTGAT
CACTTTAAAA CCCTTAACGA CACCCAAGGG CACAATATGG GTGATCAATT ATTAATAGCG
GTTGCCGCCA GAATACAAGA CAGTGTTCGA GATGAAGATA TTGTCGCTCG ATTAGGGGGT
GATGAGTTTG TTGCCTTAAT TTCTAATCTT GGTGAAGATG AAGCAACTGC TGGTCATGTT
GCCGAAAAAG TCGCTGAAAA AATACGTCTC TCCATTTGCC AACCTTACAA ATTATCTATC
AAAGAAAATG TAGATGCTAA CAACGAAATG ATTTTTCACT GCACGCCAAG TATTGGCATC
AGTTTATTCA AATCAAACTT AACCAGCCCC GATGAAATTC TAAAACAAGC TGACGTTGCA
ATGTACCAAG CAAAAGCGGC GGGCAGAAAT GCTATTCGTT TCTTTGATCC AGCTATGCAG
ATTGCGTTAG AAGAAAATGC GGCTATGTTA GCTGAACTGC ACCAAGCAAT TGATAATGGT
GAGCTTGAAT TATTTTACCA AATACAAATA GATGAAACTA AGGGCATTCA AGGTGCCGAA
GTCTTATTAC GATGGTTTCA TCCGATACGA GGAATGGTTT CGCCACTTGA TTTTATTCCT
ATGGCGGAAG AAAGCGGTTT AATCATACCC ATAGGACGTT GGGTATTAGA GTCAGCTTGT
CATCAACTTA AAGTGTGGGA AAACATCCCC AACCGAGAAA ACTGGCAAAT ATCCGTTAAT
GTGAGTGCCT TACAATTTCA ACAAGAAAAT TTTGTTGAAA TTGTGCAAGA AATCATCCTT
TCAAATAATA TAAATCCCCA CGGTTTAAAA CTGGAATTAA CCGAAAGCAT GGTGCTAGAT
AATGTAGATA TTATCATTGA GAAAATGCAC CAGTTAAATC AACTCGGTAT TGACTTCTCG
ATGGATGATT TCGGTACTGG ATACTCTTCT CTTTCGTGTT TGAAACGATT ACCACTGAAG
CAGTTAAAAA TAGATCAATC ATTTGTACGT GATATCACCA CAGATCCCGA TGATGCCGCA
ATCGTACAAA CCATTATCAA CTTATCTAAC AGTCTAAAAT ATGACGTCAT TGCAGAAGGT
GTTGAAACCC AGGAGCAGCG TCAATTTTTA TTTAATAATG GCTGTAGTCA ATATCAAGGT
TATTTGTTTA GCCGTCCTGT GCCTATTGCA GAGTTCGAGG AATTAGTAAG CTCCATGTCA
GTTAACTTTG CTGCGGCGCT AGACTAA
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| Protein sequence | MFSYMDTSSF IALLYNAALL ISLGVIYDAL KLESIKNKKL RDLISGLLVG MLGLAVMNTS
WEMAPGMFFD TRWVLISLCG LFFGLVPTLI AGAMMVSLRL HIGGAGILVG SLCVIIPGSI
GCLFAIILKR KNLKLDWFKL YSFGMLIQIT VLGCMLLMPE HLRYKVIGAV IQPVIVVFPV
CTMLVGLILR RQRDRRKSEY DLTESQKLLN REQSLMRGLI GSLPDLISFK DVQGRYLGCN
HAFEQFVGLT EQELKGKMDQ ELKGNFKPSD IAGLDEQEII ASGKVYSQDE WVVYPDGSKV
LHETIKKTFD GFDGTRYGLM SVSRDITERK NHEDQIQRLA FYDSLTQLPN RRMLQDRLQL
LVTTSARDER FNALFFIDLD HFKTLNDTQG HNMGDQLLIA VAARIQDSVR DEDIVARLGG
DEFVALISNL GEDEATAGHV AEKVAEKIRL SICQPYKLSI KENVDANNEM IFHCTPSIGI
SLFKSNLTSP DEILKQADVA MYQAKAAGRN AIRFFDPAMQ IALEENAAML AELHQAIDNG
ELELFYQIQI DETKGIQGAE VLLRWFHPIR GMVSPLDFIP MAEESGLIIP IGRWVLESAC
HQLKVWENIP NRENWQISVN VSALQFQQEN FVEIVQEIIL SNNINPHGLK LELTESMVLD
NVDIIIEKMH QLNQLGIDFS MDDFGTGYSS LSCLKRLPLK QLKIDQSFVR DITTDPDDAA
IVQTIINLSN SLKYDVIAEG VETQEQRQFL FNNGCSQYQG YLFSRPVPIA EFEELVSSMS
VNFAAALD
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