| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0670 |
|---|
| Symbol | |
|---|
| ID | 3522824 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 672068 |
|---|
| End bp | 673672 |
|---|
| Gene Length | 1605 bp |
|---|
| Protein Length | 534 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637283135 |
|---|
| Product | GMC family oxidoreductase |
|---|
| Protein accession | YP_267420 |
|---|
| Protein GI | 71282351 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTACAACT ATATTATTGT TGGTGCTGGC TCCGCTGGTT GTGTTTTAGC TGCGCGTTTA
ACCGAAAATC CTAATATTAC TGTTTGTTTA TTAGAAGCGG GCGGACCCGA TAAAAGTGTC
TTTATTCATG CTCCCGCAGG CGTAGCAGCA ATGTTGCCTA CGAAGATAAA TAACTGGGCA
TTTGAAACTA TTCCTCAAAA AGGACTAAAC GGTCGTAAAG GTTATCAACC TAGGGGGAAA
ACCCTTGGGG GCTGTTCATC TACCAATGCC ATGCTGTACG TAAGAGGCAA TAAATGGGAT
TACGATAATT GGTCAGCGCT AGGCAACAAA GGCTGGAGCT ATGAAGAAGT GCTGCCTTAT
TTTAAAAAGT CTGAAGGTAA TGAGTATTTT TCTGACCAAT ATCACAACCA AGATGGTCCG
CTAGGTGTCT CCAATGCAAC GGCTGCCAGT AATACCAATG AAATGTTTAT TGCATCTTGT
CAGGAACAAG GGCTGAAACA GAATGATGAT TACAATGGTG CTGAGCAAGA AGGTTGTTTT
ATGTATCAGC GCACGGTAAA AAACGGTGAA CGTTGTAGCG CAGCTAAAGC CTTTTTAACA
CCGCACTTGA ATCGTCCAAA TTTAACGGTA ATAACTCATG CATTAACGGA AAAAGTATTA
TTTGAGGGAA AAAAAGCAGT CGGCATACGC TATAAAAAAG ACAAAAAATC AGTCGATATT
CATTGTGATA AAGAAGTCAT TCTTAGCGGT GGTGCTTTTG GTTCACCACA AGTCTTAATG
CTCTCAGGGG TTGGTCCAAA AGAGCACCTT TCAGATAAAA ACATCTCACT TGTTCACCAT
CTCCCAGGTG TAGGTCAAAA CTTACAAGAT CACATTGATT ATATACAAAC TTATCGAGTT
GCCAGTAGTG ATGAGACTTT TGGTCTATCA CTACAAGGTG GTACCAGCAT GCTCAAATGG
ATGTTTGAAT GGAAGAATAA ACGTTCTGGA AAAATCACCA GTACGCTGGC AGAATCAGGG
GCATTTTTTA GTACGCAGGA CAATGTAGTC GCGCCAGATG CACAGTTAGT CTTTGTACCC
GGTATTGTCG ATGATCATGC CCGTAAAGTG AATTTTGGTC ATGGTTATAG TTGCCATATT
ACGGTGCTTC GTCCTGATAG CACAGGTGAA GTGAAACTCA ATAGTAGTAA TCCAGAAGAT
TCGTTAGCAA TAGATCCTAA GTTTTTTGAT AATGACAAAG ATTTAGATTT GATCAAACGT
GGTGCGAAAA AAATGCGCGC TATTCTTGAA AGTAGTCCTT TCGATGGTAT TCGTCAAAAG
CTGTTATTTC CCCTTGAAAA AGGCAATGAG CATGCCCTAG AGCAAGACAT TCGTAATCGC
TCAGACACTC AGTATCATCC CGCTTGTACT TGTAAAATGG GCACTGAGTA TGATGCTATG
GCTGTTGTTG ATGAACAGCT TAAAGTACAT GGTTTAAATG GAATTAGAGT TGTAGATGCA
TCTATTATGC CTAAATTGGT CAGTGGTAAT ACCAACGCAC CTACCATCAT GATTGGTGAA
AAAGCTGCCG ATATGATTCT GGCTGATTAT GAGGATTCAC AATGA
|
|---|
| Protein sequence | MYNYIIVGAG SAGCVLAARL TENPNITVCL LEAGGPDKSV FIHAPAGVAA MLPTKINNWA
FETIPQKGLN GRKGYQPRGK TLGGCSSTNA MLYVRGNKWD YDNWSALGNK GWSYEEVLPY
FKKSEGNEYF SDQYHNQDGP LGVSNATAAS NTNEMFIASC QEQGLKQNDD YNGAEQEGCF
MYQRTVKNGE RCSAAKAFLT PHLNRPNLTV ITHALTEKVL FEGKKAVGIR YKKDKKSVDI
HCDKEVILSG GAFGSPQVLM LSGVGPKEHL SDKNISLVHH LPGVGQNLQD HIDYIQTYRV
ASSDETFGLS LQGGTSMLKW MFEWKNKRSG KITSTLAESG AFFSTQDNVV APDAQLVFVP
GIVDDHARKV NFGHGYSCHI TVLRPDSTGE VKLNSSNPED SLAIDPKFFD NDKDLDLIKR
GAKKMRAILE SSPFDGIRQK LLFPLEKGNE HALEQDIRNR SDTQYHPACT CKMGTEYDAM
AVVDEQLKVH GLNGIRVVDA SIMPKLVSGN TNAPTIMIGE KAADMILADY EDSQ
|
|---|
| |