| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0629 |
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| Symbol | |
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| ID | 3521163 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 625655 |
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| End bp | 627535 |
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| Gene Length | 1881 bp |
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| Protein Length | 626 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 637283094 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_267379 |
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| Protein GI | 71280694 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.328878 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTTCATTA AGCAATGTCT TGTCACTTTT TTAATTATTG CGAGTTACAT TAGTAGTATT
TTTTTCTGTT TATCGGTTAA CGCTAACGAA AATAAACGCG CTGATGTCAT AATCGCGTTG
TTTAAAACTA ATAAACCAGC ATCCCCCGAA CAAGCAGATA GCTTACTTCA AGAATTGAAA
AGTACAATTG CTTCCAATGA TTTTCTACGT CAAAAAGAAT ATATACGGGC AAAGTGTTGG
AATCAAAAAG CCGAAACAAA TGAACAAATA ATATCAGCTA TATCATACGC AAATGAACAA
CTCGATATAT TTAGCCAGTA TACCCCATCA AAAATCACAA TTGATTTAAC GTTATGTAAA
ACCAGCTATC AACGATTACT AGGTCAAGTT GAGACTACAC TTAAAGATTT AACTACCGCA
ATTAACCAAG CATACACCAT TGAAGCACAG CTACTGGTTG CCCATGGACA TAGTCAACGA
GGCACTCTGC ACTCTTATCA AGGCAATTAC TCCGCATCCC TTGAGGATTT ACTTACAGCA
CAAAATCACT ATGAGTCACT TAAATTAACC TATTGGGCCA ATATAAATTT AGGCGAACTA
GCGACTAGCT ATCGACGATT TGGTGATGCA AGAACAGCTT TGAAATATCA ATTACAGTTA
GAAGAGATTT ACATCAAAGA AGGGAAAATA TTTGAAGCCA ATGGCATAAA CATTCAAATA
GCCTCTTCTT TGGAGCAATT AAATAAATTA GATGAAGCCA ACACCCGTTA TCAAGTAAGC
CAACAGTTTC TTCTCAACAA ACAACCAGTC ATTGCAGCTG ACATGTCGAT AAATATCGCC
AACAACCTAA TAACATTAGG GCAATACGAC AAAGCGCTGA CTATATTACA ACAAGCAGAA
AGTACAATTA CACCTGAATT TAATGCTCCG TATAGTTTTT TACAATTATA TTTAGCTAAT
GCTCAGCTGA AACTTAACAA TTACCCCGCT AGCTTACACG CTTTACAAAA CGCTGAAGCA
GCCTTCTTAA TCGATAAAAA TCAACGTGGA CTTAGTAAAG TCCATTTACT CAGAAGCAAT
ATTCACGAGG CTAATAAAAG CTGGAAAAGT GCTTACTTTG CGTTAAGAAA TCATCTGCAC
GTTCATTTAG CACAAGATAA AAGTGTGCTT ACAAAGCTAA ATGCTGAATT ACAAACTCGC
TTTGATACTG ATAGAATTAA GCATGAAAAT ACTTTATTAG TTCAGCACGC TAAAGATAAA
GAAATACAAT TGAACATGTT GCAACGGAAT AAATCGATGC AATTCATCAT AATTACCTTA
GTCGGAATTA TATTAATATT GGTGTCAATA TTTGCTTATA AACAAATGCA TCATAAACAC
CAATTTAAAA AACTCGCCTT TACTGATGAA TTAACAAAGA TAGCTAATCG CCGAGAAACC
TATTTTCAGG CTGAAAAGTG TCTTACCTAC AGTAAGAAAA ACCAAACACC GTTCTCGCTA
ATTTTCTTTG ATGCTGACTA CTTTAAGTTA GTGAATGATG AATTAGGCCA TAATATTGGT
GACCAAGTGT TAATTTGCCT TGCCAATATC GCATCTAATG TCATTCGAAA AGGTGATGTT
GTAGGTCGTG TTGGAGGCGA GGAATTTATA ATTTTACTGC CTGATACCGA CATAGATACA
GCATTATCTA TTGCTAATAG GTTGTTAACT AACATTGAGC AGTATGAGTG GTCAATCATT
TCAAACGATT TAACACAAAC AGTCAGTGCT GGTGTCGTGA GTTACCAAGG AGAGAACGAT
TTATCAGAAC TATTATTTAA AGCTGATAAA GCGCTTTATG AAGCAAAGGC AGCAGGTCGA
AATCATATAA AGACCTTTTG A
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| Protein sequence | MFIKQCLVTF LIIASYISSI FFCLSVNANE NKRADVIIAL FKTNKPASPE QADSLLQELK
STIASNDFLR QKEYIRAKCW NQKAETNEQI ISAISYANEQ LDIFSQYTPS KITIDLTLCK
TSYQRLLGQV ETTLKDLTTA INQAYTIEAQ LLVAHGHSQR GTLHSYQGNY SASLEDLLTA
QNHYESLKLT YWANINLGEL ATSYRRFGDA RTALKYQLQL EEIYIKEGKI FEANGINIQI
ASSLEQLNKL DEANTRYQVS QQFLLNKQPV IAADMSINIA NNLITLGQYD KALTILQQAE
STITPEFNAP YSFLQLYLAN AQLKLNNYPA SLHALQNAEA AFLIDKNQRG LSKVHLLRSN
IHEANKSWKS AYFALRNHLH VHLAQDKSVL TKLNAELQTR FDTDRIKHEN TLLVQHAKDK
EIQLNMLQRN KSMQFIIITL VGIILILVSI FAYKQMHHKH QFKKLAFTDE LTKIANRRET
YFQAEKCLTY SKKNQTPFSL IFFDADYFKL VNDELGHNIG DQVLICLANI ASNVIRKGDV
VGRVGGEEFI ILLPDTDIDT ALSIANRLLT NIEQYEWSII SNDLTQTVSA GVVSYQGEND
LSELLFKADK ALYEAKAAGR NHIKTF
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