| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0626 |
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| Symbol | rpoA |
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| ID | 3520070 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 622788 |
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| End bp | 623777 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637283091 |
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| Product | DNA-directed RNA polymerase subunit alpha |
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| Protein accession | YP_267376 |
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| Protein GI | 71279611 |
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| COG category | [K] Transcription |
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| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
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| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0163866 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCAGGGTT CTGTAACCGA ATTCCTTAGA CCACGCTTAG TTGGCATTGA AACCGTTAGC
CCTCGTCGTG CTAAGGTAAC TTTGGAACCA CTAGAACGTG GTTTTGGTCA CACTTTAGGT
AATGCGTTAC GTCGTATTCT TTTATCTTCA ATGCCGGGTT GTGCCGTAAC TGAAGTTGAA
ATTGACGGTG TTTTACATGA GTACAGTAGT AAAGAAGGTG TTCAAGAGGA CATCATCGAA
ATATTGTTAA ACCTTAAAGG GCTTGCAGTT ATTTTAGAAG GCAAGAATGA AGCCGTTCTT
ACCGTAACTA AGTCTGGTGA AGGCCCTGTA ACGGCAGCTG ATATACAACA TGACGGAGAT
GTAACAATTG CAAATCCTGA TCATGTTATC TGCACCTTAA CAGGTGAAGG TTCTATCAGC
ATGCGCATTA AAGTTGAAAT GGGACGTGGT TATGTTCCCG CTTCTGCGCG CCGTGATGCC
GAGGAAGAAG ATCGTGCTAT TGGTCGTTTG TTGGTTGACG CCTCATTCAG CCCAGTAGTT
AGAATTGCTT ATGATGTTGA TTCTGCACGT GTTGAACAAC GTACAGATTT AGACAAATTA
GTTTTAGATA TGGAAACCAA TGGTACATTG GATCCGGAAG AAGCTATCCG TCGTGCTTCA
ACTATTCTTG CTGAACAGCT TGATGCGTTT GTTGAACTTC GTGATATCAA AGAAGTAGAG
CAAGTGGAAG AAAAACCATT GTTCGACCCA ATCTTGCTTC GTCCTGTTGA TGATCTAGAA
TTAACTGTTC GTTCAGCTAA CTGTCTAAAA GCAGAAGCAA TTCAATACAT TGGTGATTTA
GTACAACGTG CTGAAGTGGA GCTTCTTAAA ACGCCTAATT TAGGTAAGAA GTCTCTAACT
GAAATCAAAG ACGTGTTAGC GTCGCGTGGT TTGTCTCTAG GCATGCGCCT AGAAAACTGG
CCACCTGAAA GCATTGTTGA CAACGACTAG
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| Protein sequence | MQGSVTEFLR PRLVGIETVS PRRAKVTLEP LERGFGHTLG NALRRILLSS MPGCAVTEVE
IDGVLHEYSS KEGVQEDIIE ILLNLKGLAV ILEGKNEAVL TVTKSGEGPV TAADIQHDGD
VTIANPDHVI CTLTGEGSIS MRIKVEMGRG YVPASARRDA EEEDRAIGRL LVDASFSPVV
RIAYDVDSAR VEQRTDLDKL VLDMETNGTL DPEEAIRRAS TILAEQLDAF VELRDIKEVE
QVEEKPLFDP ILLRPVDDLE LTVRSANCLK AEAIQYIGDL VQRAEVELLK TPNLGKKSLT
EIKDVLASRG LSLGMRLENW PPESIVDND
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