Gene CPS_0606 details

Gene Information

• Locus tag: CPS_0606
• Symbol: typA
• ID: 3521608
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: +
• Start bp: 611378
• End bp: 613195
• Gene Length: 1818 bp
• Protein Length: 605 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 637283071
• Product: GTP-binding protein TypA
• Protein accession: YP_267356
• Protein GI: 71281137
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.226291
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTTAGATA AATTAAGAAA TGTGGCAATT ATTGCTCACG TTGACCACGG AAAAACCACT 
TTAGTTGATA AATTATTAGA GCAGTCTGGT ACCCTAGATA CGCGTGGCGG TCTAGAAGAA 
CGTACGATGG ATTCGAATGA TATCGAAAAA GAACGTGGTA TCACAATCTT AGCTAAAAAT 
ACGGCTGTTA ACTGGAATGG CTACCGTGTA AACATCGTAG ATACTCCTGG CCATGCTGAT 
TTTGGTGGTG AAGTTGAGCG TGTAATGTCA ATGGTAGATT CAGTTTTACT TATTGTTGAT 
GCACAAGAAG GCCCTATGCC ACAAACGCGT TTCGTAACGA AAAAAGCGTT TGCTCAAGGT 
TTAAAACCAA TTCTTGTTAT TAACAAAGTT GATAAGCCTG GTTCTCGTCC TGATTGGGTT 
ATGGACCAAG TTTTTGAATT GTTTGATAAC CTTGGCGCTA CAGATGAACA GCTTGACTTT 
AAAGTTGTTT ACGCTTCAGC AATCAATGGT TGGGCTTCGT TAGAAGAAGG CGTTACTGGC 
ACTGACATGA CTCCTTTATT TGATACTATT ATTAAAGAAG TTCCACAGCC AATCGCTGAT 
CCAGAGGGTG CATTTCAAAT GCAAATCTCT CAACTTGATT ACAACTCGTA CTTAGGTGTA 
ATTGGCGTTG GTCGTATTAC TCGTGGTTCT GTTAAGCCGA ACCAACAAGT AACTATACAA 
TTAGCAAACG GCGGCGTTCA TAACGCTAAA GTAGGTAAAG TATTTGGTTA TTTAGGACTA 
GAGCGCCTTG ATATCGCTGA AGGTTTTGCC GGTGATATTA TTGCAATTAC TGGTTTAGGC 
GAATTAAAGA TTTCTGATAC TGTTTGTTGT CCAACAGAAG TTGAAGGTTT ACCTGCATTA 
TCTGTTGATG AACCAACTAT CAACATGACG TTCCAAGTAA ACACTTCACC ATTTTGTGGT 
AAAGAAGGTA AGTACGTTAC TTCACGTAAC ATCAAAGATC GTTTAGACAA AGAATTGATT 
CATAACGTAG CTTTACGTGT TGAGCAATTA GAAGATGCTG ATAAATTTAA AGTATCAGGT 
CGTGGTGAAC TTCACTTAGG CATTTTAATT GAAAACATGC GTCGTGAAGG TTTTGAATTA 
GCTGTATCAC GTCCAGAAGT TATTATTCGT GAAATTGATG GTCAGTTACA AGAACCATAT 
GAAACAGTAA CGATTGATGT TGAAGAACAA CATCAAGGAC CTATCATGGA GAAGATGGGT 
GTTCGTAAAG CTGAATTAAC AGATATGGCA CCAGATGGTA CTGGCCGTAT TCGTATGGAT 
TTCATCATGC CAAGTCGTGG TTTGATTGGT TTCCAAACTG AATTCATGAC ATTAACGTCA 
GGCTCTGGTT TGATTTATCA TACATTCTTT GAATACGGAC CTCACAAGGG TGGCGAAATC 
GGCCAACGTA AAAATGGTGT AATGATCGGT AATGCAACAG GTAAAGCATT AACTAACGCT 
ATCTTTAACT TACAATCTCG TGGTCGTATG TTAATCGGAC ACGGTGTTGA TATTTATGAA 
GGTCAAGTTA TTGGTATTCA TAGCCGCGAT AACGATTTAA CAGTAAATGC CCTTAAAGGT 
AAGCAGTTAA CTAACGTTCG TTCATCAGGT ACTGATGAAG CACAAACATT AACGCCACCT 
ATTGTTATGT CTTTAGAGCA AGCATTAGAA TTTATCGATA ACGATGAATT GGTAGAAGTT 
ACACCAGAAA GCATTCGTAT ACGTAAAAAA TTCTTGAAAG AGAATGATCG TAAACGTGAA 
GGTCGCGGTG TTAAATAA 

 

Protein sequence

MLDKLRNVAI IAHVDHGKTT LVDKLLEQSG TLDTRGGLEE RTMDSNDIEK ERGITILAKN 
TAVNWNGYRV NIVDTPGHAD FGGEVERVMS MVDSVLLIVD AQEGPMPQTR FVTKKAFAQG 
LKPILVINKV DKPGSRPDWV MDQVFELFDN LGATDEQLDF KVVYASAING WASLEEGVTG 
TDMTPLFDTI IKEVPQPIAD PEGAFQMQIS QLDYNSYLGV IGVGRITRGS VKPNQQVTIQ 
LANGGVHNAK VGKVFGYLGL ERLDIAEGFA GDIIAITGLG ELKISDTVCC PTEVEGLPAL 
SVDEPTINMT FQVNTSPFCG KEGKYVTSRN IKDRLDKELI HNVALRVEQL EDADKFKVSG 
RGELHLGILI ENMRREGFEL AVSRPEVIIR EIDGQLQEPY ETVTIDVEEQ HQGPIMEKMG 
VRKAELTDMA PDGTGRIRMD FIMPSRGLIG FQTEFMTLTS GSGLIYHTFF EYGPHKGGEI 
GQRKNGVMIG NATGKALTNA IFNLQSRGRM LIGHGVDIYE GQVIGIHSRD NDLTVNALKG 
KQLTNVRSSG TDEAQTLTPP IVMSLEQALE FIDNDELVEV TPESIRIRKK FLKENDRKRE 
GRGVK