| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0596 |
|---|
| Symbol | |
|---|
| ID | 3521674 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 599965 |
|---|
| End bp | 600567 |
|---|
| Gene Length | 603 bp |
|---|
| Protein Length | 200 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 637283061 |
|---|
| Product | putative lipoprotein |
|---|
| Protein accession | YP_267346 |
|---|
| Protein GI | 71281203 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3417] Collagen-binding surface adhesin SpaP (antigen I/II family) |
|---|
| TIGRFAM ID | [TIGR02722] uncharacterized proteobacterial lipoprotein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC TTATTATGAT TACCAGTGTT GCATTAACAC TTACTCTTGT TGCCGGTTGT
ACCAACAAAT CCGTTGTACG TTATGGAGAC GCAACAGAAG TTGAAACAAC CGACATTAGT
TTTGGCTCTA CTGACCTACA AAAAGTAGCT GGTGATATGA CTGACTCATT ACTAGTATCT
CCTGTCGTAG GTACACTAAC AGCAAACACT CGCCCTATTA TGTTTGTTGA AAGTATTAAA
AATAAAACCA GTGAACACAT TGATACCGAA TCAATTACTG ACTCTATTTC AACCAAATTA
CTTCGTTCTG GTAAATTTAG ATTTGTTGAT ATGGGCCGAG TAGCAGCTGC ACGTAAACAG
CTTGATTACC AACAAAGCAG CGGTATGGTT GATCCAAACA AAGCGATGCA ATTTGGTAAG
CAAGTTGGTG CGCAATATAT GCTGTATGGC AACTTAGCTA GCATAGTTAA GTCTAATAAA
GATCAGTCAG ATGTTTATTA CAAATTTACC CTTCGTTTAA TGGATTTAGA AAGTGGCTTA
GTTGAATGGG CTGATGAAAC TGAAATCCGT AAAACCAAAG GTAAAGAATT TGTTAGCTGG
TAG
|
|---|
| Protein sequence | MKKLIMITSV ALTLTLVAGC TNKSVVRYGD ATEVETTDIS FGSTDLQKVA GDMTDSLLVS
PVVGTLTANT RPIMFVESIK NKTSEHIDTE SITDSISTKL LRSGKFRFVD MGRVAAARKQ
LDYQQSSGMV DPNKAMQFGK QVGAQYMLYG NLASIVKSNK DQSDVYYKFT LRLMDLESGL
VEWADETEIR KTKGKEFVSW
|
|---|
| |