Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_0594 |
Symbol | |
ID | 3518931 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 597300 |
End bp | 599240 |
Gene Length | 1941 bp |
Protein Length | 646 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 637283059 |
Product | polysaccharide biosynthesis protein |
Protein accession | YP_267344 |
Protein GI | 71278441 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTCTTTAA TTCAGTCTGT TTTGAGTTTG CCGCGTGCTT ATAAACGTGC CATCTCGTTG TTGATAGATT CTATCTTTTT ATTTTGTGCT TTTTGGTTAG CATTATTTAT GCGCCTTGAT AGCTTCTCCC CACTATTCGA CCAAGGTTAC TGGCTAGTGT TTTCCTGCTC TTTACCGCTA AGTTTATTAG TTTTTGTAAA GCTGGGCCTT TATCGTGCTG TATTACGTTA TATGAATATG CAAGCGGTTT GGGCTATAGC ATTGGGCAGT ATTTTTTCTG CCATGTTCGT TATTGGGTTT TCTTTTTTGT ATACCGCAGG CATTCCTCGA ACTGTTCCTT TTATTTTCAT TAGCTTATGT TTGATATTGA TTGGCGGCTC AAGAGTTTCA GTAAGAGCGG TAATTAGTCA TCAACGCTGG CATAAAAAAG CCTCTGTATT GATATATGGC GCAGGTTCTT CAGGCCGTCA ATTAGCGACG GCTTTATCAC AAGGTCCTGA ATATCATGCG GTGGCTTTTA TTGATGATTA TAAAGCGCTT CAAGGACAGA TTATTCAAGG CATTCCTGTT TATTCTCCAG AAGAAATTTC CCACGTAGTT GAAAGAAAAA CCGTTCAAAA AATATTATTA GCTATACCAA GCGCCTCAAG AGCAAGGAGG AAACAAGTGT TGGCTAAAAT TGATTGTTTA GGTATTCAGG TATTAACCAT TCCAGGTATG GCTGATATTG TTGAAGGCAA GGCTAAACTT GAAGAGTTTA AAGATGTTGG TGTTGAAGAT TTATTAGGGC GTGATTCTGT AGAGCCAAAA CCAGAATTGA TGAATGCCGA TATAGCCGAT AAAGTAGTTA TGGTTACTGG GGCCGGTGGC TCTATTGGCT CTGAATTATG CCGTCAGATA ATTCGATTAA AACCTACTAA GCTTGTGTTG TTTGAGTTAT CAGAATTCGG CTTGTATACC ATTGATAAAG AACTTAATGA ATATAAGCAG CAACATGATT TAGCTGTTGA AGTATTGCCA CTTTTGGGGT CAGTACAAAG GGTTAATCGC ATTGAAACAG TAATGAAAAG TTTTGCCGTA CAAACGGTTT ACCATGCAGC AGCATACAAG CATGTGCCAT TGGTTGAGCA TAATGTTGTT GAAGGAGTTA GAAACAATGT TTTTGGTACT TATTACGCAG CGCGTGCTGC GATAAATGCC AATGTTGAGA CCTTTGTTTT AATCTCCACC GATAAAGCTG TTAGACCTAC TAATATCATG GGTACCACTA AGCGTATGGC TGAGTTAGTA CTACAGGCGT TAGCTAAAAC ACAACATTCT ACGCGCTTTT GTATGGTGCG TTTTGGGAAT GTATTGGGTT CCTCTGGTTC AGTAGTACCG CTGTTTAGAA AACAAATTAA AAATGGTGGT CCGGTAACGC TAACTCACCC TGACATCACT CGTTATTTCA TGACTATTCC TGAAGCTTCG CAACTAGTTA TTCAGGCTGG CGCTATGGGT AAAGGTGGCG ATGTCTTTGT GCTTGATATG GGGGATGCGG TAAAAATATA TGACTTAGCC AGTAACATTA TTCACTTAAG TGGTTTCTCC GTTAAAAGCG CTGAATTACC TGATGGAGAT ATAGAGATTA AATGTACGGG TTTGAGACCA GGCGAGAAAC TCTATGAGGA ACTTCTTATA GGTGATAACG TTTCAGGGAC TTCACATGAG CGTATTATGA CTGCACAAGA AGTGATGCTT GATTGGGATG AGTTAGAGGC ATTGATATCG AGGCTTGACG ATGCTTGTCA TGCGTTTGAT CATGAATTAA TTCGTGAAAT CTTACTCAAG GCGCCAACAG GTTTTAATCC TACGGATGGA ATTTGTGATT TAGTCTGGCA GCAGAAAAGT ACTTTACAGC AATATACGGC TGATATTATT GAACTGAAGG TTGCCACTTA G
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Protein sequence | MSLIQSVLSL PRAYKRAISL LIDSIFLFCA FWLALFMRLD SFSPLFDQGY WLVFSCSLPL SLLVFVKLGL YRAVLRYMNM QAVWAIALGS IFSAMFVIGF SFLYTAGIPR TVPFIFISLC LILIGGSRVS VRAVISHQRW HKKASVLIYG AGSSGRQLAT ALSQGPEYHA VAFIDDYKAL QGQIIQGIPV YSPEEISHVV ERKTVQKILL AIPSASRARR KQVLAKIDCL GIQVLTIPGM ADIVEGKAKL EEFKDVGVED LLGRDSVEPK PELMNADIAD KVVMVTGAGG SIGSELCRQI IRLKPTKLVL FELSEFGLYT IDKELNEYKQ QHDLAVEVLP LLGSVQRVNR IETVMKSFAV QTVYHAAAYK HVPLVEHNVV EGVRNNVFGT YYAARAAINA NVETFVLIST DKAVRPTNIM GTTKRMAELV LQALAKTQHS TRFCMVRFGN VLGSSGSVVP LFRKQIKNGG PVTLTHPDIT RYFMTIPEAS QLVIQAGAMG KGGDVFVLDM GDAVKIYDLA SNIIHLSGFS VKSAELPDGD IEIKCTGLRP GEKLYEELLI GDNVSGTSHE RIMTAQEVML DWDELEALIS RLDDACHAFD HELIREILLK APTGFNPTDG ICDLVWQQKS TLQQYTADII ELKVAT
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