| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0541 |
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| Symbol | |
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| ID | 3522493 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 539224 |
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| End bp | 541065 |
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| Gene Length | 1842 bp |
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| Protein Length | 613 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 637283006 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_267299 |
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| Protein GI | 71282021 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCAGTCAT TATTTTTGTG TGTTTTTATT AGTATTTCCG TAGGACTAAT TACAACCTCC
CCCCAAGCAA TTGCTGAATC CTTTCAATAT GAGAATGATC AAACAGATGT ACTGAAATTA
AAGTTTAGTT CAGAGTATAT CTCTGAAAAA TTACTTATAG CCGACAGAAA TAGACGCGAA
AACCCAGTAC TATATAAAAA AATCTTAGCT GAGTTGGCAC CATTAGAAAA ATCATTTACT
CGTGATCAAC ACTCTTATTA TCAGTTTCTT CAAGGTTACT TGGCCATTTA CCATGGAGAT
TATGAGCAAG CCGATAAACT CTTGTCTGAG GTTCTAAATT CTAGTGCCGA TAAACTTATG
AAGTTTAGAG CAAACTATAC CTTGATTAAT GTTGCTGCGG CCAAAAAAGA CTGGTCTGAC
GGTTTAAGAC ATATTGCCGT AAACAAAGAA ATGCTGCCAT CTATTACTGA TAAAGAGCAT
TATCAACTAA GTATTCTAAC CGCTGTTATT TTTTATAATC AACTTCAACA GTTTGATTTA
GTGCTTAAAA ACATAGCGCA GGTAAAGCGA GATAATCTCC CTCAAGAACA TAACTGTTTT
CTCGAACAAT TCTCACTTGA AGCAAAACTC AACTTACAAC TAATAAAACC TGGCGATAAA
AGTATTGATA ACGGTTTAGA CATTTGTCAG CAAGCTGGAA ACAAGATAAG TACCAATATA
ATTCGTGTGT ATCGAGCAAA GTTATATTTA AAAGCGCAGC AACCAGAGAA GGCACTTGCT
GAAATATTGC CTTATTACGA TGAAATCAAC ACAACGCTAT TTCCCATGTT GATTGCGGGT
ATGAATAACA CTCTAGCCAA GAGCAATTAT CTAATAGGTA ATATTAAGAG CGCTGAAAAA
TATGCTTTAG CGGCACTCAG GGCTAATAAA AACAATACAA TTATTAAGCA GAGTGCTGAT
AGCTATAAAT TACTTTACCA AATAAATAAA TCACAAAAAA ATATCGCTCT AGCGCTGAGT
TACCATGAGA AATATAACGC GTTAGAAGTG GCGCATTTGG AGGACGAAAA ATCTAAGCAT
GTTGCGTTTC AATTGGCTGA ATTAAAAACG TTTGAACATG AAAACCAAAT AATATTATTG
AATGAACAAA ATACTTTTTT AGCTGCAGAG CAAGCGTTAT CAAATATTAA AGTAGCTAAT
ATCCAGCTGA TTATAACTGT GATGACTTTG ATCATTATTA TGTTAATTAT TTGGGGTGCC
CGCTTATGGA GATCTCATAA ACGCGTAAAA GCATTATCTG AATATGATGA GTTAACCGGT
ATATATAACC GCAGACACTT TACTCAAATT GCCGTAAGTA CCCTGAAGTA TTGTCAAAGC
GCTGAACAAG ATTTAAGTCT GATTATGTTT GACTTAGATA ACTTCAAAAA AATTAACGAT
AACTTTGGTC ATATCTGTGG TGACTGGGCA TTAAAAGAAA CCATTAGAGT ATGTGAAACC
ATTGGCCGTA AAAATGATAT ATTTTCCCGT TTAGGTGGTG AAGAATTTTG TATTTTATTA
CCAAGTTGTA ATATTGAAGT AGCAGTTCTG CGGGCTGAAT CTTGTCGTGC CGCTATTGAA
AATACGATTA CTGAAGAGTC AGGTAATGAC TTTAGTATTA CTGCCAGTTT TGGCGTAACT
GATGTAGCAC GTTCTGGCTA TAATTTAGAG AAGTTATTAA TTGATGCTGA CTTTGCTGCT
TATGAATCGA AACATGCAGG TCGAAATCGG GTTACTGTTT TTGAACCTCA AGAGGATGAA
ACAGGAAAGT CGTTAGGTAA CTCATGGAGT GTTGCTCCTT AA
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| Protein sequence | MQSLFLCVFI SISVGLITTS PQAIAESFQY ENDQTDVLKL KFSSEYISEK LLIADRNRRE
NPVLYKKILA ELAPLEKSFT RDQHSYYQFL QGYLAIYHGD YEQADKLLSE VLNSSADKLM
KFRANYTLIN VAAAKKDWSD GLRHIAVNKE MLPSITDKEH YQLSILTAVI FYNQLQQFDL
VLKNIAQVKR DNLPQEHNCF LEQFSLEAKL NLQLIKPGDK SIDNGLDICQ QAGNKISTNI
IRVYRAKLYL KAQQPEKALA EILPYYDEIN TTLFPMLIAG MNNTLAKSNY LIGNIKSAEK
YALAALRANK NNTIIKQSAD SYKLLYQINK SQKNIALALS YHEKYNALEV AHLEDEKSKH
VAFQLAELKT FEHENQIILL NEQNTFLAAE QALSNIKVAN IQLIITVMTL IIIMLIIWGA
RLWRSHKRVK ALSEYDELTG IYNRRHFTQI AVSTLKYCQS AEQDLSLIMF DLDNFKKIND
NFGHICGDWA LKETIRVCET IGRKNDIFSR LGGEEFCILL PSCNIEVAVL RAESCRAAIE
NTITEESGND FSITASFGVT DVARSGYNLE KLLIDADFAA YESKHAGRNR VTVFEPQEDE
TGKSLGNSWS VAP
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