| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0536 |
|---|
| Symbol | |
|---|
| ID | 3520534 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 534162 |
|---|
| End bp | 535865 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637283001 |
|---|
| Product | RNA pseudouridine synthase family protein |
|---|
| Protein accession | YP_267294 |
|---|
| Protein GI | 71280071 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAATA CTTCGATTTC AACTTACCTT TCCTCTTTTG TCAGTGATAT TTCACACTAC
TCATTACCCG ACTCCTTTCC CGGTAAGTTT ACCTACCCAT TTTGTTATAA GGCACATCCC
TTAGCATTAG CGGCGAGTGA AGAGTTACAA CAAAAATTGG AAAAGTTCCA TCCTGTTGAG
TCTGAGCAAC AAGGAAGAAT GTATGGGGTA TTAATAGTTA AAGATACTCA AGGCTCACTT
GGCTACTTGG CTGCACTTTC CGGCAATGCG AATGAGAGCA ACACCGATAA GAGTAATATC
GACAACGACG CTTCAATTAA CTTTGTTCCT ACAATACATC AAGCATATAA CCAGAGTGAA
TTTGAGAAAC AACAACAAGT TGAAATCAAT GGTATTAACA AAAAAATCAA CCTACTCGCA
GCTAATCCTG AGATTGATAG GTTAACGGTT TTATTGGAGA CAGAAACCGC TAAATCTGAT
GAAGAAATAC AATCTCTGCA ACAGCAAATG CGGGATAATA AAAAAGCACG TAAAGACCAA
CGTACTTGGC TAAGTACAAC TGTTTTACCT GAAGATGAAC ACAGAGACAT TAGCATTGCG
CTATCTCGCG CCAGCGTAAC GGATAAAAAA GCGCTGCAAG CACTAAAGCT ACAACATCAA
ACAAAGATCA ACTTAACCTC AAGTAATTTG CAGCAACTTA CTAATGAAAT AGAGTCGTTA
AAAAACCTCA GGAAAAAGCT CTCATCAACA CTGCAAAAGC ATTTTTTTAA GCAATATCAA
ATGCTAAATA GTAAAGGTGA GAGAAAAGAT TTGATTAAAA TTTTTGCTGA TACCTTATTG
CAAAAACCGC CGGCGGGTTC TGGTGATTGC GCAGCACCAA AATTGTTACA GTATGCCTTT
GAACATAAGT TAACACCGCT TTGTATGGCT GAATTTTGGT GGGGAAAACA ACCTAAATCA
GAAATAAGAA AACACAAACA CTTCTACCCT GCCTGCCAAG GTAAGTGCCT CCCTATTTTA
GGTCACATGC TTGAAGGTAT GGAGGTAGAT AAAAACCCTC TATTGATTAA TCCAGCCGAA
GGTATAGACC TAGAGATTGT TTTTCAAGAC GAGCATGTTG TGGTGGTAAA TAAGCCCGCA
GGTTTATTAT CTGTTCCTGG AAAGTCGATT AAAGACTCAG TGTATACACG TATTAAGACA
CAATTCCCTC AAGCAAGCGG TGGTTTGATT GTTCATAGAT TAGATATGGC CACTTCTGGG
TTATTAATGC TGGCACTCAA TGAACGCGCC CATAAACATT TGCAACAACA GTTTATGAAT
AAAGAAATTA ACAAACGTTA TGTGGCAACT ATTGAGGGTA AATTAGAAAA AACATCTGGT
GAGATATGTT TACCTCTTCG TGGAGACTTT GATGATAGAC CAAAACAAAT GGTGTGCCAT
GAGCATGGTA AGTATGCTGA AACGCACTGG CAGCTTATTG AAGAAGTAGA TAATACCAGT
AAGTTATTTT TATACCCTAT TACAGGCAGA ACTCATCAAT TACGCATGCA TTGCGCTCAC
CCAGATGGAC TTAACCTCCC CATTATTGGT GATAGTTTAT ATGGCCATAG TGCTGATAGA
CTTCATTTAC ATGCACAACG TTTAAGCTTT ACACACCCCA TAACTAAAGA GTTATTAACC
TTTGAAGTAG CAGAAAACTT TTAA
|
|---|
| Protein sequence | MSNTSISTYL SSFVSDISHY SLPDSFPGKF TYPFCYKAHP LALAASEELQ QKLEKFHPVE
SEQQGRMYGV LIVKDTQGSL GYLAALSGNA NESNTDKSNI DNDASINFVP TIHQAYNQSE
FEKQQQVEIN GINKKINLLA ANPEIDRLTV LLETETAKSD EEIQSLQQQM RDNKKARKDQ
RTWLSTTVLP EDEHRDISIA LSRASVTDKK ALQALKLQHQ TKINLTSSNL QQLTNEIESL
KNLRKKLSST LQKHFFKQYQ MLNSKGERKD LIKIFADTLL QKPPAGSGDC AAPKLLQYAF
EHKLTPLCMA EFWWGKQPKS EIRKHKHFYP ACQGKCLPIL GHMLEGMEVD KNPLLINPAE
GIDLEIVFQD EHVVVVNKPA GLLSVPGKSI KDSVYTRIKT QFPQASGGLI VHRLDMATSG
LLMLALNERA HKHLQQQFMN KEINKRYVAT IEGKLEKTSG EICLPLRGDF DDRPKQMVCH
EHGKYAETHW QLIEEVDNTS KLFLYPITGR THQLRMHCAH PDGLNLPIIG DSLYGHSADR
LHLHAQRLSF THPITKELLT FEVAENF
|
|---|
| |