Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_0484 |
Symbol | |
ID | 3520263 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 486776 |
End bp | 489025 |
Gene Length | 2250 bp |
Protein Length | 749 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 637282949 |
Product | TonB-dependent receptor |
Protein accession | YP_267242 |
Protein GI | 71279802 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.698636 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAATTTTA CTCTAAAACC TATTGCTCTC GCTGTTAACC TCACCATCTT AGGTAGCAGT GCTATGGCGC TTCCTGCTTT AGCGCTCCCA TTTGTAGCAA ATACGGCTCA AGGCACGATT AAAGATATTG AAGTCATCAC TATCTCAAAT CAGCGTCATA ATTCTCTCGT AGACAATCAA AGTTACGCGC AAGGTAAAAC TACCGAAGCT GATTTAGCCA ATTGGCTAGC TTCTGTCCCC GGTGCGAACA TTAACAGTAA TGGCCCAATT ACAGGCATAG CTCAGTACCG TGGTTTATTC GGCGACAGAG TTGCTACTTC ACTTGATGGC CATCCTATTA TTGGTGCTGG CCCTAATGCA ATGGACACAC CTTTAAGTTA CTCAACGCCA CTTATTGTTG ATTCAATGAC GGTATACCGT GGTATTGCGC CAGTTTCTGC TGGCATGAGT ACAATCGGTG GTGCTATCGA TATTTCAATG CGTAAAGCAG AAGTAATGAA TTCGGAGAAT GTGCAAGTAT CAGGTGATTT GCAAGCAGGC TACCGAAGTA ATAATAGCGC GAGTACACTT TCAGGTGTGA CCAATATTGC TACAGGTGAT GTTGCGGTAT TACTGTATGG CAATACTCAG GCCGGCGATA GTATGGAAAG TGGTGACGGA ACGGTTATTG AGCCGACTGA TTTTGATAAA ACTCAAGCAG GTTTTGATGT AAGACATGCG ACTGAAAATA ATACTGTGGG TTTGAGTTAT CACTATACAA AAACGACTGA CTCAGGCACG CCAGCACTGC CAATGGATAT AGAATATATA GAAAGTCGCC GATTTAATGT AGATGGTGAT TTTCAATTAG GACAATGGCA AGGTGAATGG TCAGTAGGCT ATTTAGATGC TGATCATGGT ATGACTAACT TTTTAATGCG TGCCCATGAT CCAATGAAAA AACGTCGTAA CACCGCTCTT GCAGACACGA CAGATTTTAA GTTTGTACTA AATCGTGAGT TCAGCTTTGG TGAATTGAGT TTTGGTGTTG ATGGCTATCT TGCAACGCAT GACTCAGTTA TTACCAATCC AACGAATGCT ATGTTCGAAG TAGTCAACTT TAATAATGTG CAAGATGACC GTTTTGGCTT TTTTACTGAA TGGCAGAATC AATATGGACA AACTACTGTT CAGTTAGGCG TTAGAGTAAA ACATGCTATA TCAAATGCTG ATGAAGTAAG CGGTAATATG GCAATGAATA TGGCTGACAT GAACATGGAC TCAGGAATGG GTGGCATGGA TTCAGGTATG GGCGATATGG ACTCAGGCAT GGGTGATATG AATTCAGGTA TGGACGACAT GAACTCAGCT ATGATGCCAA GCATGGGAAG TTTGTTAAGT GATCTTGAAG GTGACTTTAA TAATGCAGAC CGCAAAGTTT CAGACACTAA TGTAGATGTT GCCTTAAGTA CTCAAACACA ACTAAGTGAA ACTCTATCAC TTTATGTTGG TGTGGGTATG AAAAGCCGTG CACCATCATA CCAAGAGCGT TACTTATGGA CACCAATGGA ATCTACCGGT GGTTTAGCAG ATGGTCATAC TTATATTGGT GATATCGACC TTGAATCAGA AACAGCGTAT CAAGCTGACC TTGGTTTAAC CTGGCAATCA AGTGACTTCA TGATTGCGCC ACATGTATTT TATCAAAACA TTGATAACTA CATTCAAGGC ACGCAACTGG ATATGGACGA TGCATCAGCT AAAATGATGG CGTCGATGAT GGCTCAAGAT GATAACCCAC TTAAATTTAG TAATGTTGAT GCTAAATTAT ATGGCGCGGA TGTTAATTGG TATTACAATC TCACAGACAA CTTCCAGTTA TCGGGAATCG CCAGTTATGT TAGAGGTGAA CGTCGTGATA TTGATGATAA CTTATACCGC ATTGCACCAC TTAATGGTCA AGTAAGCGTT AGTTACCATA ATGAAAATGT CATCACCAAC TTAACGTTAG TTGCTGTTTC GGCACAAGAT GATGTTTCTG CAACGAATAC CGAGCAGGCA ACCTCTGGTT ATGGTTTAGT TAATATTGAT ATTGAGTATT TTGTAACAGC TGATTTTACC CTACGTGGGG GGGTTGATAA CCTACTTGAT AGAGAATATC AAAATCATTT AGGCGGCTAT AATCGTGTTA AAGAAGTTGG TACGCCAGTA ATGGATAGAT TGCCCAGTGA AGGTTTGAGC GCGTGGGTAG AAGCGACATA CTCTTTTTAA
|
Protein sequence | MNFTLKPIAL AVNLTILGSS AMALPALALP FVANTAQGTI KDIEVITISN QRHNSLVDNQ SYAQGKTTEA DLANWLASVP GANINSNGPI TGIAQYRGLF GDRVATSLDG HPIIGAGPNA MDTPLSYSTP LIVDSMTVYR GIAPVSAGMS TIGGAIDISM RKAEVMNSEN VQVSGDLQAG YRSNNSASTL SGVTNIATGD VAVLLYGNTQ AGDSMESGDG TVIEPTDFDK TQAGFDVRHA TENNTVGLSY HYTKTTDSGT PALPMDIEYI ESRRFNVDGD FQLGQWQGEW SVGYLDADHG MTNFLMRAHD PMKKRRNTAL ADTTDFKFVL NREFSFGELS FGVDGYLATH DSVITNPTNA MFEVVNFNNV QDDRFGFFTE WQNQYGQTTV QLGVRVKHAI SNADEVSGNM AMNMADMNMD SGMGGMDSGM GDMDSGMGDM NSGMDDMNSA MMPSMGSLLS DLEGDFNNAD RKVSDTNVDV ALSTQTQLSE TLSLYVGVGM KSRAPSYQER YLWTPMESTG GLADGHTYIG DIDLESETAY QADLGLTWQS SDFMIAPHVF YQNIDNYIQG TQLDMDDASA KMMASMMAQD DNPLKFSNVD AKLYGADVNW YYNLTDNFQL SGIASYVRGE RRDIDDNLYR IAPLNGQVSV SYHNENVITN LTLVAVSAQD DVSATNTEQA TSGYGLVNID IEYFVTADFT LRGGVDNLLD REYQNHLGGY NRVKEVGTPV MDRLPSEGLS AWVEATYSF
|
| |