Gene CPS_0479 details

Gene Information

• Locus tag: CPS_0479
• Symbol: rpe
• ID: 3522609
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: +
• Start bp: 480988
• End bp: 481662
• Gene Length: 675 bp
• Protein Length: 224 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 637282944
• Product: ribulose-phosphate 3-epimerase
• Protein accession: YP_267237
• Protein GI: 71282136
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0036] Pentose-5-phosphate-3-epimerase
• TIGRFAM ID: [TIGR01163] ribulose-phosphate 3-epimerase

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCACCAT TTTTAATTGC CCCTTCTATA TTATCAGCCA ACTTTGCTCG CTTAGGTGAT 
GATGTTGCTA AAGTCTTAGC TGCAGGCGCT GATGTTGTTC ATTTTGATGT GATGGATAAC 
CACTTTGTCC CAAATTTAAC GTTTGGTCCT ATGATATGTA AATCACTACG TGACTACGGC 
ATAACAGCCC CAATTGATGT CCATTTAATG GTTAAGAATG TTGATACGCT CATTCCCGGT 
TTTGCTGAAG CGGGAGCTGA CATAATCACT TTCCATCCTG AAGCCAGTGA CCATATCGAC 
AGAAGCTTAC AGCTGATAAA AGACAATGGT TGTAAAGCAG GCTTAGTACT AAACCCAGCG 
ACACCTTTAC ATTGTTTAGA CTTTGTTATG GATAAGCTTG ACGTTATTTT ATTAATGTCA 
GTAAACCCAG GTTTTGGTGG CCAATCTTTT ATTCCAACAA CATTAGATAA ATTGCGTTTG 
GTAAAAGAAA AAATTAAGCA AAGTGGCTAT GATATTCGCT TACAAGTTGA TGGTGGTGTT 
AAAGCCAATA ATATTGCTGA AATTGCTGAT GCAGGCGCTG ATATGTTCGT TGCGGGTTCT 
GCAATATTTT CTCAAGATGA TTATAAAGTC GCAATTGATG AAATGCGCGC TGAGTTAGCG 
AAAGTTTCGC AATAA 

 

Protein sequence

MSPFLIAPSI LSANFARLGD DVAKVLAAGA DVVHFDVMDN HFVPNLTFGP MICKSLRDYG 
ITAPIDVHLM VKNVDTLIPG FAEAGADIIT FHPEASDHID RSLQLIKDNG CKAGLVLNPA 
TPLHCLDFVM DKLDVILLMS VNPGFGGQSF IPTTLDKLRL VKEKIKQSGY DIRLQVDGGV 
KANNIAEIAD AGADMFVAGS AIFSQDDYKV AIDEMRAELA KVSQ