Gene CPS_0470 details

Gene Information

• Locus tag: CPS_0470
• Symbol: pilP
• ID: 3521526
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: +
• Start bp: 472060
• End bp: 472614
• Gene Length: 555 bp
• Protein Length: 184 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 637282935
• Product: type IV pilus biogenesis protein PilP
• Protein accession: YP_267228
• Protein GI: 71281057
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3168] Tfp pilus assembly protein PilP

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.385764
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATAAAAG TCCAACAAAT ATCGACAAAA ATTATTCTCA GTCTCACGGC GCTGACTTTG 
GTATCGGGGT GTTTTGACGA TACTTCAGAA ATAAAAACGC ACATGGCTCA AGTGCAGGCA 
ACAACGACCA ATTACATTGA TCCTATGCCA GAGGTGAACC CTTTTAATCA CATCGCTTAT 
TCTGCTGATG ACCTACGTAG CCCATTTGTG TTACCTAGGC CTGAAGCTAT ACAGCAAAAA 
ATGCAGCAAA TGGCAGGATG CTTAAGTCCC GATACTAACC GTCGTAAACA ACCGTTAGAA 
AAGTATGCTT TAAGTGATTT AACTATGCGC GGTACTTTGG GCGATGCAAG TATGTTATGG 
GCTTTACTAG AAGCTTCAGA CTTAAGTCTT CATCGAGTTG CTCTAGGAAA TTATCTTGGT 
TTATATAATG GTCGAATTAC ACAGGTGAGT GCAAAAACAG TGAAAATAAT TGAATTAGCT 
CCAGATGGTT CAGGGTGTTG GGTAGAGCGT GAAGCTACAT TAAATATTGT GCAATCTGAA 
GAGTCAAATA AGTAA 

 

Protein sequence

MIKVQQISTK IILSLTALTL VSGCFDDTSE IKTHMAQVQA TTTNYIDPMP EVNPFNHIAY 
SADDLRSPFV LPRPEAIQQK MQQMAGCLSP DTNRRKQPLE KYALSDLTMR GTLGDASMLW 
ALLEASDLSL HRVALGNYLG LYNGRITQVS AKTVKIIELA PDGSGCWVER EATLNIVQSE 
ESNK