Gene CPS_0469 details

Gene Information

• Locus tag: CPS_0469
• Symbol: pilO
• ID: 3521132
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: +
• Start bp: 471467
• End bp: 472063
• Gene Length: 597 bp
• Protein Length: 198 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 637282934
• Product: type IV pilus biogenesis protein PilO
• Protein accession: YP_267227
• Protein GI: 71280664
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3167] Tfp pilus assembly protein PilO

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.429204
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATTTG ATGCATCCCA GTTTGACAAC CTTGAACTTG ATAATATAGG TCAATGGCCC 
GCAGCGGCAA AGCTGCTTTT AGCTGTTTTT CTAGCGGTCA TGGTCGGTTT TTTAGGTTAT 
ATGGGCTTAA TTAGCGATCA AATGAAAGAA CTTGATCGTG TCTCATACGA AGAAAAAACG 
TTAAAAGAAT CTTACCGTGC TAAATACCAT GTTGCAGCTA ATTTAGACTT GTTTCGCGCT 
CAAATGGTTG AAGCAGAAGA TACTTTTGCT AATCAACTGC GTAGTTTACC CAATAGCCAT 
GAGATCCCAG GTTTATTAGA TGATATTACG TTTGTTGGTA CAACCAGTGG TCTTGATTTT 
GTAAAATTAG AGTGGCAACC AGAAATTAGT AAAGAAATAT ATATTGAATT ACCGATTGAT 
ATTGAAGTAA TAGGTCCTTA TCACTCCTTT GGTCAGTTTG TTAGCAAAAT TGCTGGCTTA 
CCCAGAATTG TGACCTTGCA CGACTTTAAG ATTAGTATCT CACAAAGTGA TAGTGAAATA 
TTGAATTTAA AGCTACAAGC TAAAACATAC CGTTATCAAG AGGAGGCAGC CAAATGA 

 

Protein sequence

MKFDASQFDN LELDNIGQWP AAAKLLLAVF LAVMVGFLGY MGLISDQMKE LDRVSYEEKT 
LKESYRAKYH VAANLDLFRA QMVEAEDTFA NQLRSLPNSH EIPGLLDDIT FVGTTSGLDF 
VKLEWQPEIS KEIYIELPID IEVIGPYHSF GQFVSKIAGL PRIVTLHDFK ISISQSDSEI 
LNLKLQAKTY RYQEEAAK