Gene CPS_0468 details

Gene Information

• Locus tag: CPS_0468
• Symbol: pilN
• ID: 3523077
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: +
• Start bp: 470901
• End bp: 471467
• Gene Length: 567 bp
• Protein Length: 188 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 637282933
• Product: type IV pilus biogenesis protein PilN
• Protein accession: YP_267226
• Protein GI: 71282602
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3166] Tfp pilus assembly protein PilN

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.142315
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCACATA TAAACCTACT TCCTTGGCGC GCAGCAGCAC TGAAGGCTCA GCAAAAAGAA 
TACTTTACCA TTTTAGCCGC GGTTGGTTTA CTTACCTTAG CTCTGGTTTT AGTTATTAAT 
TTTTATTATC AAGCTCATAT TGATGGTCAA AATAGTAAAA ATCAATATTT GAAAAATGAA 
ATTGCCCAAC TTGATATTCA GATTGATGAG ATAAAAACCT TAAACGCGAA GAAATTAGCG 
TTACAAAAAC GAATTAATGT TGTTGAACAA TTACAACGTA GTCGTAATGT AGGCACACAA 
GTACTTGATG AAATAGCAAA AATCATCCCT AATGGTATCT ATATAATCGA GCTAGAAAAA 
CAAGGTAATA CTTTACAGCT AACTGGAAAG AGCGAATCGA ACAACCATTT AGCTAATATG 
ATTCGTGCGG TTGAGTTATC TGATTTATTT GTTGATGCCA CCCCTGAGTC TATTACTGCT 
GATGATGGAT CTCCTAAACT ACTTAGCAGT TTTAAAATGA AAGTGAAAAT TAAAGGCTTA 
GATGATGCTA AGAAAGGGAG CAAATAA 

 

Protein sequence

MAHINLLPWR AAALKAQQKE YFTILAAVGL LTLALVLVIN FYYQAHIDGQ NSKNQYLKNE 
IAQLDIQIDE IKTLNAKKLA LQKRINVVEQ LQRSRNVGTQ VLDEIAKIIP NGIYIIELEK 
QGNTLQLTGK SESNNHLANM IRAVELSDLF VDATPESITA DDGSPKLLSS FKMKVKIKGL 
DDAKKGSK