| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0455 |
|---|
| Symbol | metB |
|---|
| ID | 3521665 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 451577 |
|---|
| End bp | 452743 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637282920 |
|---|
| Product | cystathionine gamma-synthase |
|---|
| Protein accession | YP_267213 |
|---|
| Protein GI | 71281194 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
|---|
| TIGRFAM ID | [TIGR02080] O-succinylhomoserine (thiol)-lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGATTA CTAAAAAAGG TAATATTACC ACTTCGGCAG TAAGAGCCGG TATTAATACC
GACCAGCAGC ATGGCGCTGT GGTTGCTCCT ATTTACCTAT CCAGTACCTA TTCATTAAAG
GGCTTTAATA ACAAACGCCA ATTTGATTAT TCTCGTACGG GTAACCCAAC ACGAGCTACT
TTTGCTGGCG CGATTGCAGA ATTAGAGCAA GGCAGTGTTG GTATTGTTAC CAGTACTGGC
ATGGCAGCAG TGCATTTAAT TTGTCAGTTA TTATCTACCC AAGACACGGT CGTCATTCCT
CATGATTGTT ATGGCGGTAG TTTTAGATTA TTTACTCATT TAGCTAAACG TGGTCAATTC
AAGCTTATTG TTGTGGATCA AAATGACCAA CAAGCACTGG ATAATGCGTT AGCACATAAG
CCAAAATTGG TGTTACTTGA AAGCCCAAGT AATCCTTTAT TACGTTTGGT AGATATTGAA
GTAGTAACCA AAGCGTGTCA CGCAGTAGGT GCATTAGTCG CGGTAGATAA CACGTTTTTA
TCTCCAGCGC TGCAACAACC TCTTACGCTA GGCGCTGATA TTGTTTTTCA CTCAACCACT
AAGTACATTA ATGGTCATAG TGATGTAGTG GGCGGTGTTG TCGTTGCTAA AACCGAAGAG
TTAGGTGAGC AGTTAGCGTG GTGGGCGAAT TGTATTGGTA TTACCGGCAG TGCCTTTGAT
AGTTTCCTCG CGTTACGTGG TTTAAAAACA TTACCGGTGC GAATGAAGCA ACACCAAGAA
AATGCGCTAC GAGTTGCTGA TTTTTTAAAA AATCACGATG CTATTGATGC GATATATTTC
CCAGGTTTTC CTGAACACAC AGGTCATCAT ATTGCCAAAA AACAGCAGTA TGGCTTTGGT
GCAATGTTAA GCTTTGAAAT AAAGGGTGAC GTTGAAGCGG TTAAAAAATT ATTTGAAAAC
CTCGAATTGT TCACCCTTGC ACAATCATTA GGTGGTGTTG AAAGTCTGAT CAGTCACCCA
TCAACTATGA CGCATGCAGG TATGACAATC CCAGATCAGC TTGAAGCGGG GATTACTCAG
TCTTTAGTAC GTATATCTGT AGGCATTGAA GATATTGATG ACATATTAGC TGATTTAGCA
CATGGTTTAA CGCAGAGCCA ACTGTAA
|
|---|
| Protein sequence | MSITKKGNIT TSAVRAGINT DQQHGAVVAP IYLSSTYSLK GFNNKRQFDY SRTGNPTRAT
FAGAIAELEQ GSVGIVTSTG MAAVHLICQL LSTQDTVVIP HDCYGGSFRL FTHLAKRGQF
KLIVVDQNDQ QALDNALAHK PKLVLLESPS NPLLRLVDIE VVTKACHAVG ALVAVDNTFL
SPALQQPLTL GADIVFHSTT KYINGHSDVV GGVVVAKTEE LGEQLAWWAN CIGITGSAFD
SFLALRGLKT LPVRMKQHQE NALRVADFLK NHDAIDAIYF PGFPEHTGHH IAKKQQYGFG
AMLSFEIKGD VEAVKKLFEN LELFTLAQSL GGVESLISHP STMTHAGMTI PDQLEAGITQ
SLVRISVGIE DIDDILADLA HGLTQSQL
|
|---|
| |