Gene CPS_0452 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPS_0452 
Symbol 
ID3519350 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameColwellia psychrerythraea 34H 
KingdomBacteria 
Replicon accessionNC_003910 
Strand
Start bp449451 
End bp450806 
Gene Length1356 bp 
Protein Length451 aa 
Translation table11 
GC content36% 
IMG OID637282917 
Productsensory box protein 
Protein accessionYP_267210 
Protein GI71279148 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCTAATAT ATAACTTAGC AATTCATAGC TATTTGGGTT GTGATTCGTT AGCTCTTCTA 
CCTAAGGCGA ATACTTTGAG TAAAGAAAAA AACATAAACA ACGCTGATGA CACCATTAAA
GATCAGATAT TAGCCAGTAT CGATTCCTTT ATATATACCA AAGATTTATC GGGAAAATAC
ACCTATGCAA ACCAAGCGGT TTTAGATTTA TTTGAAAAAA ACTTAGCAGA TGTTATTGGT
TTTGATGATA CTCACTTTTT TGATTTAGCT TTATCTAAAC AATTAAAAGC AAACGATCGT
ATGGTGATGG ATCAAGTAAT CCGCATTGAA AATGAAGAAA GTAACTTTAT CAGAGCGAAA
AATGAAACCC GTATATTTAA AGTGGTCAAA AAACCACTTT TTGACCATTT AGGTAATGTA
AACGGCATTT GTGGTATATC GACAGACATC ACAGTAGAAA AACAACTACA AGAACAAGTC
AATGAACAAA GTTACTTACT TGAGACCATG CTTAATAATA TAGATGCCCA TATTTATGTT
AAAGACTGTG AACGTACCTT TTTATATGTG AATAATCGCG TTGCCGAGTT ATTTGGCGAT
AAGGCCGAGA ACATCATAGG TAAAAAAGAT ACTGATATTT TACCCAAAGA AATTGCCGAA
CATTTTTACC AATCAGATAA GCAGGTTTTT GAAACCAATC AAAAACAGGT CATTGAAGAA
ACGACTCATG GTGAAAATGG TGATAACTGT CACTACATCA GCACTAAAGT CCCCTTTGAT
CGGCCAGATA AATTACCCGC ATTAATCGGT TTTTCAACTG ATGTGACCGA ACTATTCAAA
CTTAAAGAAG AATTTAAACT ACTTGCCAAT ACTGACCCAT TAACCAATTT ATATAATCGA
CGCTTTTTCA TTGAGCAAGC AGAAAAAGAG TATCAACGTG CAAAACGCTA TTCATTGTCT
ATGACACTGA TCTCCATTGA TATTGATCAT TTCAAAAGCA TCAACGACCA ATTTGGTCAC
CCTGCGGGTG ACCAAGTATT AATAGAAATT GCTAAGCAAT TAAAAGCGAG TTTACGGCAA
ACAGATATTC TAGCGCGCAT CGGTGGTGAG GAGTTTTCTA TTCTGTTACC TGAAACCTCG
GCGATGTCAG CCATGACTTT TGCAGAGCGT ATTAAAGAAG AACAAAGCAG GTTAATCATT
ACTGGTGATT GGCAGGGAGA AATAAACCTT TCGGTGAGTA TCGGTGTTTC AAGTCTTATC
GCCAGCGACA AGGCCTTTGA TGTGTTATTT TCTCGTGCAG ACAAAGCCTT ATATCAAGCT
AAGAATACCG GTAGGAATAC CGTTTGTTAT CTATAA
 
Protein sequence
MLIYNLAIHS YLGCDSLALL PKANTLSKEK NINNADDTIK DQILASIDSF IYTKDLSGKY 
TYANQAVLDL FEKNLADVIG FDDTHFFDLA LSKQLKANDR MVMDQVIRIE NEESNFIRAK
NETRIFKVVK KPLFDHLGNV NGICGISTDI TVEKQLQEQV NEQSYLLETM LNNIDAHIYV
KDCERTFLYV NNRVAELFGD KAENIIGKKD TDILPKEIAE HFYQSDKQVF ETNQKQVIEE
TTHGENGDNC HYISTKVPFD RPDKLPALIG FSTDVTELFK LKEEFKLLAN TDPLTNLYNR
RFFIEQAEKE YQRAKRYSLS MTLISIDIDH FKSINDQFGH PAGDQVLIEI AKQLKASLRQ
TDILARIGGE EFSILLPETS AMSAMTFAER IKEEQSRLII TGDWQGEINL SVSIGVSSLI
ASDKAFDVLF SRADKALYQA KNTGRNTVCY L