Gene CPS_0448 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPS_0448 
SymbolhemE 
ID3521815 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameColwellia psychrerythraea 34H 
KingdomBacteria 
Replicon accessionNC_003910 
Strand
Start bp445407 
End bp446474 
Gene Length1068 bp 
Protein Length355 aa 
Translation table11 
GC content39% 
IMG OID637282913 
Producturoporphyrinogen decarboxylase 
Protein accessionYP_267206 
Protein GI71281343 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0407] Uroporphyrinogen-III decarboxylase 
TIGRFAM ID[TIGR01464] uroporphyrinogen decarboxylase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGACAGAAT TAAAAAATGA TACCTATTTA CGTGCGCTAT TAAAGCAACC AGTAGATTAC 
ACGCCGGTAT GGATGATGCG TCAAGCGGGT CGTTATTTAC CAGAGTATCG TGAAGTACGT
AAAAATGCCG GTGACTTTAT GTCGGTATGT AAAAATGCTG AATTGGCTTG CGAAGTAACT
ATTCAACCAT TACGTCGTTT CCCATTAGAT GCTGCGATTT TGTTTAGTGA TATTTTAACT
ATTCCTGATG CTATGGGTTT AGGTTTATAT TTTGAAACAG GTGAGGGACC AAAATTTGAA
CGTCCTATTA CATGTAAAGC GGATGTTGAT AAAATTGCCG TACCTGATCC AGAAGATGAA
TTAGGTTATG TAATGAATGC CGTGCGTACT ATTCGCAAAG AACTAAAAGG CGAAGTACCG
CTGATTGGTT TTTCAGGTAG CCCTTGGACA TTAGCAACCT ACATGATTGA AGGTGGTAGT
TCTAAAGCTT TCACTAAAAT TAAAAAGATG ATGTTTGCTG AGCCACAAAC CTTACATTTG
TTACTTGATA AGTTGGCTGA CTCAGTCATT AGTTATTTAA ATGCCCAAAT TGCTGCAGGC
GCGCAATCTG TAATGGTATT TGATACTTGG GGCGGCGTAT TATCTCCACG TGATTATAAT
GAGTTTTCAT TACAATATAT GGCGAAAATC GTTGATGGTT TAACGCGTCA TAATGAAGGT
CGTCAAGTGC CAGTGACATT ATTCACTAAA AATGGCGGTA TGTGGTTAGA ATCTATCGCG
GCAACTGGTT GTGATGCAGT TGGCCTAGAT TGGACCATTG ATATTGAAAA TGCAAAAGCA
CGTGTTGGTG ATAAAGTTGC TCTACAAGGC AATATGGATC CATCAATGTT ATATGCACCA
TTGCCACGTA TTGAACAAGA AGTTTCAAAA ATACTATCAG GCTTCGGTGA AGGTGGTACA
GGTCACGTAT TTAACTTAGG CCATGGTATA CATCCAGATG TGAATCCTGA TCATGCAGGT
CACTTCATTG AATCAGTACA CCGTTTAAGT AAGCCTTATC ATAAATAA
 
Protein sequence
MTELKNDTYL RALLKQPVDY TPVWMMRQAG RYLPEYREVR KNAGDFMSVC KNAELACEVT 
IQPLRRFPLD AAILFSDILT IPDAMGLGLY FETGEGPKFE RPITCKADVD KIAVPDPEDE
LGYVMNAVRT IRKELKGEVP LIGFSGSPWT LATYMIEGGS SKAFTKIKKM MFAEPQTLHL
LLDKLADSVI SYLNAQIAAG AQSVMVFDTW GGVLSPRDYN EFSLQYMAKI VDGLTRHNEG
RQVPVTLFTK NGGMWLESIA ATGCDAVGLD WTIDIENAKA RVGDKVALQG NMDPSMLYAP
LPRIEQEVSK ILSGFGEGGT GHVFNLGHGI HPDVNPDHAG HFIESVHRLS KPYHK