Gene CPS_0407 details

Gene Information

• Locus tag: CPS_0407
• Symbol: def
• ID: 3521653
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: +
• Start bp: 414157
• End bp: 414657
• Gene Length: 501 bp
• Protein Length: 166 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 637282872
• Product: peptide deformylase
• Protein accession: YP_267165
• Protein GI: 71281182
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.447377
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAGTAT TAACTATACT TACCGCACCT AATGATAAAC TTATAGAGCA AGCAAAACCT 
GTATCTGATG TAAGTCAAAT TCAGATGTTA ATCGATGACT TAATTGAAAC TATGTACGAT 
ACCGAAGATG GTATCGGTTT AGCGGCAACT CAAGTGGGTC GTAGTGAAGC CGTAGTGGTT 
ATTGATATTT CAGATAATCG TGATGAACTA CTTGTATTAG TAAACCCTGT GATAACTCAC 
GGAGAAGCAA CAGCCAAGGG GCAAGAAGGG TGTTTATCTA TCCCTGGCTA CTATGCAGAT 
GTTGAGCGTT TCACTCATGT TACGGTTGAA GCGTTAGATC GCAATGGAAA AGAGCTTACT 
ATTACCAGTG ATGAATTTCT TGCGATTGTG ATGCAACATG AAATAGACCA TTTAAAAGGT 
AAGTTATTTA TTGACTATTT ATCGCCGCTT AAACAACAAA TGGCACTAAA AAAAGTTAAG 
AAAACGATTA AAAATGGTTA A 

 

Protein sequence

MTVLTILTAP NDKLIEQAKP VSDVSQIQML IDDLIETMYD TEDGIGLAAT QVGRSEAVVV 
IDISDNRDEL LVLVNPVITH GEATAKGQEG CLSIPGYYAD VERFTHVTVE ALDRNGKELT 
ITSDEFLAIV MQHEIDHLKG KLFIDYLSPL KQQMALKKVK KTIKNG