Gene CPS_0328 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPS_0328 
SymbolhflC 
ID3520665 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameColwellia psychrerythraea 34H 
KingdomBacteria 
Replicon accessionNC_003910 
Strand
Start bp339292 
End bp340179 
Gene Length888 bp 
Protein Length295 aa 
Translation table11 
GC content38% 
IMG OID637282793 
ProductHflC protein 
Protein accessionYP_267094 
Protein GI71280201 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0330] Membrane protease subunits, stomatin/prohibitin homologs 
TIGRFAM ID[TIGR01932] HflC protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.791365 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAATT TTTTCATTGC TATAATATCA CTACTTCTTA TCTTAGCTGT ATCGTCAGTT 
TTTGTTATTT ACGAAGGCCA ACGTGGCATC GTATTTCAAT TCTCAAAAAT TAAGCGTGAT
AGTGCTACTG ATGAAATGAT GGTGTATGAA CCAGGTTTAC ATTTCAAAAT TCCATTTATT
GAGACAGTAC GTAAGTTAGA TGCACGTATT CAAACATTGG ATGAACCAGC AGATCGTTTT
GTTACTTCAG AGAAAAAAGA TTTAATGGTC GATTCATTTG TGAAATGGCG CATTGTTGAT
TTCTCTACAT ACTACCTACG TACTTCAGGC TCTGTAGATA ATGCTCGTGC ATTATTAAAG
CAAAAAGTGA ATAACGGGTT ACGTACAGAG TTTGGTAACC GCACCATTAA AGAAATCGTT
TCAGGTGATC GTGACGCGAT AATGAGTAAA GCGCTAGAAA GTGCTGCGAG TAGCCGTGAA
GATCTTGGCA TAGAAGTTGT TGATGTCCGT ATTAAAGCGA TTAACCTACC GACAGAAATA
AGTCAGTCTA TTTATGAGCG TATGCGTGCT GAGCGAACTG CTGTTGCTAA AGAACATAGA
TCACAAGGTC AAGAGCAAGC AGAGATTATT CGCGCTACTA TTGATGCTAA AGTGACAGTA
ATGTTAGCAG AAGCACAAAA GAACTCTTTT ACGGTCCGTG GTGAAGGTGA TGCACTAGCA
GCAAAAGTCT ATGCAGATGC TTACAGCAAA GATGCAGATT TCTATAGTTT CTATCGTAGT
CTTGAGGCTT ATGAAAAAAG CTTTAATAGT AAAAATGATA TCATGGTGGT TAAACCTGAT
AGCGAATTCT TCCGTTTTTT GAAAGACGGC AGTGACGTTA AAAAATAG
 
Protein sequence
MKNFFIAIIS LLLILAVSSV FVIYEGQRGI VFQFSKIKRD SATDEMMVYE PGLHFKIPFI 
ETVRKLDARI QTLDEPADRF VTSEKKDLMV DSFVKWRIVD FSTYYLRTSG SVDNARALLK
QKVNNGLRTE FGNRTIKEIV SGDRDAIMSK ALESAASSRE DLGIEVVDVR IKAINLPTEI
SQSIYERMRA ERTAVAKEHR SQGQEQAEII RATIDAKVTV MLAEAQKNSF TVRGEGDALA
AKVYADAYSK DADFYSFYRS LEAYEKSFNS KNDIMVVKPD SEFFRFLKDG SDVKK