| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0251 |
|---|
| Symbol | |
|---|
| ID | 3519049 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 255512 |
|---|
| End bp | 256693 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637282717 |
|---|
| Product | oxidoreductase, FAD-dependent |
|---|
| Protein accession | YP_267018 |
|---|
| Protein GI | 71278325 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | [TIGR02352] glycine oxidase ThiO |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATATTG CCATTGTTGG CGCAGGATTG ATGGGGCGAT TACTCGCCCT GTCTTTACTG
CGAGGTAAAC AGTCAGAAAG CGTAACCATT ACTTTATTCG ATAAGGATAA TAAGCTCGCC
CACAATAGTG CTGCTTATGC TGCTGCAGGG TTATTAACGC CATTGGGAGA GTCACTTCAT
TGTGAGCCTA ATATTGTTAG TATGGGTTTT GAGTCGTTAC GTTTATGGCC AGCTTTGCTC
GACAGTTTGG ATGAATATAC TCTTTTTCAA CAAACTGGCG CTATCATGGT GAGTCATGAG
CAAGATAAAG GTGATTATCA GCGCTTTGTT AGACACCTTA ATAATAATTA TCCAGAACAT
AAACTACATA CGCTAGATCG TGCGCAATTG CTCGAGCTAG AGCCTGAAAT AGGACGAAGT
TTTAATCACG GCTTGTACCT GCCACAAGAA GGGCAGATTG GTAATCGTCG TCTGTTGATT
GCCTTACGTA AACAGCTTGA AAAAGAAGGC ATGAGCATAA ATGGGGTTAA CTCACTAAAC
TGGTTAAGTG AGTGTCAGGT ATTTGCTATT GAAAACACTG ACTCTAACAG CAAAGTTAGT
TATCAACAGT ACGGAGTCAA TTGTAGCCAA TCATTTGATT TAGTGATTGA TTGTCGAGGT
ACTGGTGCGA GTCGTAAAAA TAGCCATAGT GCCTGTGCAC CATTAAGTGA CTTACGCTCA
GTAAGAGGAG AATTATTCCA ACTTTTTGCC CCAGATGTGA ATATTTCAAG ACCGATACGA
TTAATGCACC CTAGGTATCA GCTTTATATT GCGCCAAAAC AAAAAGGTTT TTATGTGGTG
GGTGCCACTG AAATTGAGAG TGACGATGAT GCACCGATGA CAGTGCGCTC AGCGATGGAA
TTATTGAGTG CAGCTTATAG TGTGCATCCC GGCTTTGCTG AAGCCAATAT TCGTCAACAC
GTTAGTCAAT GTCGGCCAAC TTTTAGTGAT AATCAACCTA AAATCACTCA CAAGGGCAGT
TTGATACAGG TAAACGGTTT ATTCAGGCAC GGATTTTTAA TTGCGCCGGT GGTGCTTAAA
CAAGTATTAA CACTGGTCGA CAACCTGATA AATAATACCA ACAATGAGTT GCCCTACCGT
GATTATTTGC ACACTGAGCA ACGACAAGAA GAGGTGATTT AA
|
|---|
| Protein sequence | MNIAIVGAGL MGRLLALSLL RGKQSESVTI TLFDKDNKLA HNSAAYAAAG LLTPLGESLH
CEPNIVSMGF ESLRLWPALL DSLDEYTLFQ QTGAIMVSHE QDKGDYQRFV RHLNNNYPEH
KLHTLDRAQL LELEPEIGRS FNHGLYLPQE GQIGNRRLLI ALRKQLEKEG MSINGVNSLN
WLSECQVFAI ENTDSNSKVS YQQYGVNCSQ SFDLVIDCRG TGASRKNSHS ACAPLSDLRS
VRGELFQLFA PDVNISRPIR LMHPRYQLYI APKQKGFYVV GATEIESDDD APMTVRSAME
LLSAAYSVHP GFAEANIRQH VSQCRPTFSD NQPKITHKGS LIQVNGLFRH GFLIAPVVLK
QVLTLVDNLI NNTNNELPYR DYLHTEQRQE EVI
|
|---|
| |