| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0225 |
|---|
| Symbol | |
|---|
| ID | 3520883 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 229443 |
|---|
| End bp | 230516 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637282691 |
|---|
| Product | polysaccharide deacetylase family protein |
|---|
| Protein accession | YP_266992 |
|---|
| Protein GI | 71280417 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTATA TGTTGCGGAC ACTAGTTTCA GTTTCATTAT TATTGAGCGT TGCGCTCAGC
AGTCATGCAG CAGTAATTTT ACAGTACCAT CATGTTAGCG ATAGCACCCC AGCAAGCACC
AGTATTTCCC CAAAGCAATT TGAAGTGCAC CTACAATATC TTAAAGATAA TAATTTTAAA
GTGGTGCCTT TATCTGAGTT AATTGAAGGC ATTAAAAACC AACAAGCTTT ACCCGATAAA
AGTGTCGCTA TTACCTTTGA TGATGCTTAT ATTGATGTGT TAACGCAAGC TAAGCCCATC
TTAGATAAGT TCGCATTTCC GTATACCATT TATGTCAATC CAGGCATTAT CGCTCGTAAC
GAAAAAAATG ATGCTTCCCA TTATTTATCA TGGATCCAGC TCAAAGCGCT TTCAGATGAA
GGTGTGATTA TTGCTAACCA TGGTTATGAA CATGATTCTA TGGCGCGAAT TACTGAGGGG
TTAACGCAAA CACAATGGCT GAGTAAACAA ACAGAACTAT TATTAAAAGC TGAAGCGGTG
ATTAAAGAAA ATACCGGCCA AAGCTGGCGA TATTATGCTT ATCCTTATGG TGAATATGAT
GTAGCGATAC AAGCATGGGC TAAAGAAAAT GACTTTGTTG CTTTTTCTCA ACAATCAGGC
GCGATTGATT TGTCGACAGA CTTAACCAGC GTGCCCCGTT TTCCTGCTTC AAAGCCCTAT
GACAAAATTT CTGGTTTACG TGATAAGTTG AATTCATTAG CGTTTAATAT TCGTTTAGAG
GGTGAACAAG CTGAAACAAT TTTTAAACAC AAAGAAGCTA AAAGCATCAA TTTTGTTATT
GAAACGGGGG ACTTTTATAA ATCAGCCCTC AATTGCTATA TTTCAGGTTT AGGTAAGCAA
AAAATCACGT GGAATGATGA TAAAAGTTTT AGTATCAATT TTAGTAAAGA CCTGCCAGTT
GGGAGAGTTC GAGCTAACTG CACGGCGGCA AGCATTAGTA AGCCAGGTCG CTATTATTGG
TATTCTAAGC CATGGTTTAT CTTAAAAGAT GATGGCAGCT GGTACCATTT ATAA
|
|---|
| Protein sequence | MKYMLRTLVS VSLLLSVALS SHAAVILQYH HVSDSTPAST SISPKQFEVH LQYLKDNNFK
VVPLSELIEG IKNQQALPDK SVAITFDDAY IDVLTQAKPI LDKFAFPYTI YVNPGIIARN
EKNDASHYLS WIQLKALSDE GVIIANHGYE HDSMARITEG LTQTQWLSKQ TELLLKAEAV
IKENTGQSWR YYAYPYGEYD VAIQAWAKEN DFVAFSQQSG AIDLSTDLTS VPRFPASKPY
DKISGLRDKL NSLAFNIRLE GEQAETIFKH KEAKSINFVI ETGDFYKSAL NCYISGLGKQ
KITWNDDKSF SINFSKDLPV GRVRANCTAA SISKPGRYYW YSKPWFILKD DGSWYHL
|
|---|
| |