Gene CPS_0220 details

Gene Information

• Locus tag: CPS_0220
• ID: 3518759
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: +
• Start bp: 227552
• End bp: 228130
• Gene Length: 579 bp
• Protein Length: 192 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 637282686
• Product: putative DNA uptake protein
• Protein accession: YP_266987
• Protein GI: 71278620
• COG category: [O] Posttranslational modification, protein turnover, chaperones; [S] Function unknown
• COG ID: [COG0316] Uncharacterized conserved protein; [COG0694] Thioredoxin-like proteins and domains
• TIGRFAM ID: [TIGR03341] IscR-regulated protein YhgI

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.722098
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATCACTA TTTCAGAAAA TGCTCAACAG CATTTTATTA AATTACTTTC GCAACAAGCT 
GAAGGTACCC ATATTCGAGT TTTTGTTGTA AATCCTGGCA CAGCGAAAGC TGAATGTGGC 
GTTTCATATT GTCCACCTGA CGCGGTTGAA GCCGATGATA TTCAACTGCC ATTTGAAGGT 
TTTTCAGCGA TGGTTGATGC TGACAGCAAA GGTTTTTTAG AAGACGCAGA AATTGATTTT 
ACCACGGATC AAATGGGCTC ACAGCTTACT TTGAAAGCGC CAAACGCTAA ATTACGTAAA 
GTTGCTGATG ATGCTCCACT ATTTGAACGT GTGCATTATT TCTTACAAGC AGAAGTTAAC 
CCTCAGTTAG CAGGTCATGG CGGCGAGTGT ACTTTAGTCG AAATTACCGA CGATGGTTAT 
GCTGTATTGC AATTTGGTGG TGGCTGTAAT GGCTGTGCAC AAATTGATGT TACGGTAAAA 
GATGGCATTG AAAAGCAATT AATTGAATTA ATGGCTGGCG AAATTAAAGG CGTTAAAGAT 
GCTACAGAGC ATGAACGCGG TGACCATTCG TATTACTAA 

 

Protein sequence

MITISENAQQ HFIKLLSQQA EGTHIRVFVV NPGTAKAECG VSYCPPDAVE ADDIQLPFEG 
FSAMVDADSK GFLEDAEIDF TTDQMGSQLT LKAPNAKLRK VADDAPLFER VHYFLQAEVN 
PQLAGHGGEC TLVEITDDGY AVLQFGGGCN GCAQIDVTVK DGIEKQLIEL MAGEIKGVKD 
ATEHERGDHS YY