| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0188 |
|---|
| Symbol | |
|---|
| ID | 3521150 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 200194 |
|---|
| End bp | 202560 |
|---|
| Gene Length | 2367 bp |
|---|
| Protein Length | 788 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637282655 |
|---|
| Product | putative helicase |
|---|
| Protein accession | YP_266956 |
|---|
| Protein GI | 71280682 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
|---|
| TIGRFAM ID | [TIGR01448] helicase, putative, RecD/TraA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0609464 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCAA TACCAAATGT AACCATTAGG GTAACCAAAG TCCTGGCTAC CTACAATAGC
GGTAAAATGC GCTTCAGCGG AGTGCCCGTT TGTCCCAATA CGCATCAAAA ACTCAGTAAA
CGTGACTTTT ACCTCATAAC AGCCACACCA GAACAAGCTG TATTTGAACC AGAAATTGGG
CAAGTTTGGA AAATTAATGG AGAAGCATAC ACAGAAGAAA AACCAAGTTA TAAAAAGCAT
GGAGTAGACC TTTTTCACGA AATAAGAAGA GCAAAACAAT GTGTTTGTGT GTTGCCTAAA
ACAGAAGATG CTTTTATTGC ATTCATTAAA GAAATAGCTG CATTCAAAGG AGTGGGGGCA
AAGTGGGCTA AAAAGCTATG GACTGAATTT AAGCTTGAAA CTCTTAAACA CATGGAGCAT
AGACGCGCTG CTACCCTTGA AACTGTTGTA ACCCCAAATA TTGCGAAATC GCTAATTAAT
GGCTATTCAA AGTACAGAAA TTTAAAATAC GCAACATGGC TAACGTCTAA AGAAATCCCC
ATTAAAATTC AAAAGATGAT TTTCGAATTC CAGCCGATTT CAAATGAAAT AAGAATCCAC
CAAAGCGGCT ATAAATACGC AATTGACCCT CGCACTATAA TTGAAGAAAA TCCGTATATT
CTAGCTAGCT CTTTTTCCAT GGGATTTTTT GACGTTGATA AGTTAGTGCG CCGAAAGTTT
GAACCAAACA TACTCTCGGA AGACCCTAGA AGAATGATTG CAGCTGTGAG CGAAGCTATC
CGATTATGTG TAAAAGGAGA TTATGAAACA GGAGGCCATA CAACCGTTCC ATACAAAAAA
CTACTGAAAG CATTGACAGA AATTCTACAA GAAACAGAGC AACTTGCTTC GATTGATAAG
TCATACACCA AGCCATTATT CACGATGGAA GAGCTAGCTA TTACTGCGCT CCAGGCACAT
CAGAAAGATG CTTATGTTAT CTACCCTGAC GGTCAGTATC AGCTTACTCC AACCTACTTA
ATGGAGAATG TCATTGCGCT GCGCATGCTG AACATGAAGT CACAAATAGT GACCTTTGGT
GAAGAAGAAA GTGAGGCATG TAAAAAAGCA TTCGATCTTT CACCTTTCCC ATTGCTGTCT
AAGCAAAAAG AAGCGGTATT TACCGCTATT GAAAGCAGTA TCAGCGCAAT CATTGGGGGC
GCAGGCACAG GTAAAACTAC CGTTCTACAT GCCGTTTTAA CTGCATTTGA GGCGCTTGGG
TATGTCTCAG ATGCCAGCTT ATGCCCAGAT AAAACGACGA CCAATCACAA CATAAAAACA
ATGGCTTTAA GTTGTCGCGC AGCTAAACGT ATGCGCGACT GCATCAATAA ATCAAGCGAT
GGTTCTAGGC GAGAGCGACA AATAAGCGCA ACCAGTATTG CCCAATTTAT ACATCAAACT
GTCATTGAAG ACGCAGAAGG TAAATACCTT GTAGTCATTG ATGAAGCAAG CATGTTGGAT
GTTGCAACAA TGTATAACAT CATCACAAAT ATCCACCCAA ACGTGCGAAT TTTATTAGTT
GGAGACCATT ATCAATTACC TCCAATTGGT GGTGGAAACG TTTTGGCAGA CGTGGTTAAT
TCGGGGGTTA TCCCTACCGT AGAGCTTGAT ATTGTCAAAC GACAAAAAGG GAACTCGGGA
ATCCCAGAAT ATTCTAAATT TGTGCGAGAA GGGACTGTAC CACCTAAATT GTCAAGTGGC
GCAGTCTACT TTCATGAGGT TGAGAGCGAT TTTATAGCTG ACAAATGCGC AAGCTTGTTT
GCCCTTTCGC CCTTGGATAG CATGGTTGTT GGCTCTACCA ATGCCGTGGT AAAAGAAGTG
AATAAGTTTT GCCAAGACGA GGTAAATCCT GATGGAGAAC GCTATGCAGA AGGTAAACAC
TCCGATTTCA TAAAGATTGT ACTTGGGGGG CTACGCCAAG GTGACTCTGT TTTGTTTAAA
GAGAACATTT CGCTCGATGT GACGAACGGC TCCTTAGGTA AATTAGTCTC AGTCGAATGT
AAAAAAGACA CTTTTGGCCT TGTGGTAATG GATGATGATG ACATTGAAGT TCGCCTAGAA
GAAGAAATAA TGCCAGCACT TATGCTTGGA TACAGTATGA CCGTTCACAA AGCGCAAGGG
TCTCAATTCC CAATTGTCAT CATCGCCTTG GCAGGGGGTT ATATAGATAG ATCATGGCTC
TACACTGCAA TAACTCGTGC CGAATGTGAG CTACACATAG TGAGTACAAA AAAGAAATTA
CTGACAGCAA TTAATAAACC ACCAAGTGCT TTGGGTCGAA GAACAAGGTT AAAAATGTTG
CTACAAGAAG GGGCAGATCA AATTTAA
|
|---|
| Protein sequence | MNAIPNVTIR VTKVLATYNS GKMRFSGVPV CPNTHQKLSK RDFYLITATP EQAVFEPEIG
QVWKINGEAY TEEKPSYKKH GVDLFHEIRR AKQCVCVLPK TEDAFIAFIK EIAAFKGVGA
KWAKKLWTEF KLETLKHMEH RRAATLETVV TPNIAKSLIN GYSKYRNLKY ATWLTSKEIP
IKIQKMIFEF QPISNEIRIH QSGYKYAIDP RTIIEENPYI LASSFSMGFF DVDKLVRRKF
EPNILSEDPR RMIAAVSEAI RLCVKGDYET GGHTTVPYKK LLKALTEILQ ETEQLASIDK
SYTKPLFTME ELAITALQAH QKDAYVIYPD GQYQLTPTYL MENVIALRML NMKSQIVTFG
EEESEACKKA FDLSPFPLLS KQKEAVFTAI ESSISAIIGG AGTGKTTVLH AVLTAFEALG
YVSDASLCPD KTTTNHNIKT MALSCRAAKR MRDCINKSSD GSRRERQISA TSIAQFIHQT
VIEDAEGKYL VVIDEASMLD VATMYNIITN IHPNVRILLV GDHYQLPPIG GGNVLADVVN
SGVIPTVELD IVKRQKGNSG IPEYSKFVRE GTVPPKLSSG AVYFHEVESD FIADKCASLF
ALSPLDSMVV GSTNAVVKEV NKFCQDEVNP DGERYAEGKH SDFIKIVLGG LRQGDSVLFK
ENISLDVTNG SLGKLVSVEC KKDTFGLVVM DDDDIEVRLE EEIMPALMLG YSMTVHKAQG
SQFPIVIIAL AGGYIDRSWL YTAITRAECE LHIVSTKKKL LTAINKPPSA LGRRTRLKML
LQEGADQI
|
|---|
| |