| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0161 |
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| Symbol | rpoH |
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| ID | 3520829 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 170906 |
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| End bp | 171763 |
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| Gene Length | 858 bp |
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| Protein Length | 285 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 637282628 |
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| Product | RNA polymerase factor sigma-32 |
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| Protein accession | YP_266929 |
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| Protein GI | 71280363 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGTGAAG CAATGCAACT TACCTTACCA AAGAGTGGTA GTATCGAAGC ATACATGCAA
TCTGCGTACA GCATTCCTAT GCTAACTGCG GAGAAAGAGC ATGATTTGGC TACTCGCCTC
TACAATGAAA ATGATTTACA AGCGGCGCAA GAGCTAATTA TGTCGCACTT ACGTTTTGTT
ATTCATGTTG CTAAAGGCTA TTCTGGTTAT GGTTTACCAC ATGCCGATTT AGTGCAAGAA
GGCAACGTGG GTTTAATGAA AGCCGTTAAA CGTTTTAATC CTGAAGTAGG CGTACGTTTA
GTTTCTTTTG CTGTGCATTG GATCAAAGCA GAAATTCATG AATTTGTGCT TAAAAATTGG
CGCATTGTAA AAGTTGCTAC CACCAAAGCG CAGCGTAAGT TATTTTTTAA TCTACGTAAA
AATAAAAAAC GTTTAGGCTG GTTCAGCACT GAAGAAGTAA ATACGGTAGC GGAAAACCTT
GGTGTAACAA CGAAAGATGT TATGGAAATG GAATCTCGTA TGAGTAGCCA TGATCAAGCA
TTTGAATTAT CAAAAGATGA TGATGATAAT CTTGGATCCA GTAGCTTTTC ACCTGCTCAA
TACCTTCAAG ACAAACAATC AGATTTAGCG GTTGAAGTTG AAAATGATAA TTGGGACAAC
CATGCGAATA AACGTTTATC AACAGCATTA GTAACGCTTG ATGAACGTAG TCAAGATATT
ATAAAGACGC GCTGGTTAAC CGAAGATAAA ACAACGTTAC AAGAGCTAGC TAATAAATAC
CAAATATCAG CCGAACGTGT AAGGCAGTTA GAAAAAAATG CTTTATCTAA ACTTAAAAAC
ACCATGGTTT TTGATTAA
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| Protein sequence | MSEAMQLTLP KSGSIEAYMQ SAYSIPMLTA EKEHDLATRL YNENDLQAAQ ELIMSHLRFV
IHVAKGYSGY GLPHADLVQE GNVGLMKAVK RFNPEVGVRL VSFAVHWIKA EIHEFVLKNW
RIVKVATTKA QRKLFFNLRK NKKRLGWFST EEVNTVAENL GVTTKDVMEM ESRMSSHDQA
FELSKDDDDN LGSSSFSPAQ YLQDKQSDLA VEVENDNWDN HANKRLSTAL VTLDERSQDI
IKTRWLTEDK TTLQELANKY QISAERVRQL EKNALSKLKN TMVFD
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