| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0082 |
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| Symbol | rarD1 |
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| ID | 3522143 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 85484 |
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| End bp | 86386 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 637282549 |
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| Product | rarD protein |
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| Protein accession | YP_266850 |
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| Protein GI | 71281671 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2962] Predicted permeases |
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| TIGRFAM ID | [TIGR00688] rarD protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCGCAT CAGCCATAAA TCAACTTGAA GAAAACAGCA ACCGCAATGG TGCACTAAGT
GCGCTAAGTG CCTATCTGCT CTGGGGTTTT GCACCAATAT ATTTTAAATT ACTCACCGCA
ATTGAGCCCG GTGAGATAAT GATGCACAGA GTGATTTGGT CAACAGTCTT TTTGTTAGTG
ATGATTATTG TGATGAAAAA ATGGTCACAG CTAGTGGCTA TTTTCCAGCA GCCTAAAATA
TTATTGCAAT TATCTTTATC GGCTAGCTTT CTTGCAGTGA ATTGGTTTCT GTTCATTTGG
GCAGTAAACA ACAATCATTT GCTGGATGCT AGCTTAGGTT ATTACATTAA CCCCCTGTTT
AATGTCATTC TCGGCATGAT ATTTTTTCAT GAACGTTTGC GTCGAAACCA ATTAATAGCA
GTTGGTTTAG CGCTTGTTGG AGTATTGGTA CAACTCATTG CTTTAGGTAC TTTACCAATT
ATCTCACTTG CTTTAGCAAG TACCTTTGCA ATTTATGGAT TAATTAGAAA GAAACTCCCG
ATTAATTCCT TCATCGGGTT ATTCATTGAA TCATTGATGA TGCTACCTAT AGCTCTTATT
TATTGGTTTT TCTTTGTCGA AAGCAGCACC AGTAATATGG CAATAAATGC CGCCAGTTTA
AACTTTACCT TGATAATGGC GGGCATAGTG ACAACGGCAC CTCTATTGTT TTTTACTATC
GCGGCTAAAA GATTAGCACT GTCGACCTTA GGTTTTTTTC AATACTTGGG GCCAAGTATT
ATGTTTTTGT TGGCGACGTT TTATTATCAA GAAACCATGA AAAGTGCTGA GTTAATCACC
TTTGTATTTA TTTGGGCAGC GTTAGCGCTT TATAGCCTAG ACTCATTTAA AAAGCGTACT
TAA
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| Protein sequence | MSASAINQLE ENSNRNGALS ALSAYLLWGF APIYFKLLTA IEPGEIMMHR VIWSTVFLLV
MIIVMKKWSQ LVAIFQQPKI LLQLSLSASF LAVNWFLFIW AVNNNHLLDA SLGYYINPLF
NVILGMIFFH ERLRRNQLIA VGLALVGVLV QLIALGTLPI ISLALASTFA IYGLIRKKLP
INSFIGLFIE SLMMLPIALI YWFFFVESST SNMAINAASL NFTLIMAGIV TTAPLLFFTI
AAKRLALSTL GFFQYLGPSI MFLLATFYYQ ETMKSAELIT FVFIWAALAL YSLDSFKKRT
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