| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0080 |
|---|
| Symbol | uvrD |
|---|
| ID | 3518445 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 81800 |
|---|
| End bp | 83974 |
|---|
| Gene Length | 2175 bp |
|---|
| Protein Length | 724 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637282547 |
|---|
| Product | DNA-dependent helicase II |
|---|
| Protein accession | YP_266848 |
|---|
| Protein GI | 71279005 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | [TIGR01075] DNA helicase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACGTTT CAGAATTACT CGACTCTCTC AATGATAAGC AACGTGATGT TGTTGCAGCC
CCAAAGCAAA ACATGCTTAT TTTAGCTGGC GCTGGCAGTG GTAAAACTCG AGTATTAGTG
CAACGTATCG CCTGGTTAAT GCAAGTTGAG GGGATCTCAT CGCACAGTAT TTTAGCGGTA
ACCTTTACTA ATAAAGCAGC GGCAGAAATG CGTGCTCGAG TAGAACAAGT GACCAATGGT
AATACCCACG GCATGTGGAT TGGTACTTTT CATGGCTTGG CACATCGTTT ATTAAGAATG
CATTTCCAAG AAGCTAATTT ACCGCAAAGC TTTCAAGTAT TAGATAGTGA TGATCAACTT
CGTTTGATTA AACGTATTGT TCGTTCATTA GAGTTAGATG AGAAAAAATG GCCACCTAAA
CAATTTGTTT GGTATATCAA TGGTAAGAAA GATGAAGGTT TGCGCCCTCA ACATATTGAT
GCTCAGTTCG ACCCGACGGA AGAATTGTTT GTTAAAGTTT ATAAAGCCTA TCAAGAAACC
TGTGACAGAG CTGGTTTAGT TGATTTTGCC GAGCTGTTGC TTCGTGCCCA TGAATTATGG
TTGAAAAATC CAGCACTATT AGATCATTAT CAGCAACGGT TTGGCCATAT TCTAGTAGAC
GAATTTCAAG ATACCAACGC CATTCAATAT GCTTGGCTTA CTATGCTGGG CAAAGCTCGC
AGTAAGGTGA TGATTGTTGG TGATGACGAT CAATCAATCT ATGGCTGGCG TGGCGCTAAG
ATTGAGAATA TCGAACGTTT TTTACAAGAA TATGATGACG CGAAAACTAT TCGTCTTGAG
CAAAATTATC GTTCAACCGC TAACATTTTG AAATCAGCTA ACCAATTAAT CTGCAATAAC
AACAATCGCA TGGGTAAAGA GTTGTGGACT GATGGAGAAG CGGGCGAAAA AATCTCAATT
TATACTGCTT TTAATGAAAT AGATGAAGCG CGCTTTATCG CTGGCCGTAT AAAACAATGG
CGTGACGATG GAGGAAAACT TGATGAAATA GCCATATTGT ATCGCTCAAA TGCACAATCA
CGCTTACTTG AAGAAGCGTT ATTGCAAGGA CAATTGCCTT ATCGAATTTA CGGTGGTCAA
CGATTCTTCG AACGACAAGA AATAAAAGAT GCGCTTGCTT ACATGCGTCT TATTAATAAT
CGTGATGATG ATGCGGCCTT TGAGCGTGTT ATCAATACGC CTACGCGTGG TATTGGTAAT
CAAACCTTGT CATTAGTGAG AGACGCAGCA CGGGGTTTGG AAGTAACAAT GTGGCAAGCT
TGCCAGCAAA TGTTAAAAGC AGAGCAATTA AAGGGTAGGG GCGCTAAAAC GATCACTGCC
TTTATTCAAC TTATCGAACA ATTAGAAGAT GATACGACTA ACTTAGATTT AGATCAGCAG
GCGAACTTTA TTATCAACCA CAGTGGTTTA AAGGCCATGT ATCAGGCTGA AAAAGGTGAA
CGTGCTGCAC AGCGTATTGA AAACTTAAAT GAGCTAGTCA CCGCATGTCA AACCTTTGAA
AGCGATCCTG AGTTAGCGGA AGAGCAAACC CCGTTAACGG CATTTTTAAC CCATGCGGCA
TTAGAATCTG GTGAATCTCA AGCAGACGAA TTTGAAGCCG CAGTACAGTT GATGACAATG
CACTCAGCTA AAGGCTTAGA GTTTCCTTTG GTCTTTATTG CGGGTCTTGA AGAAGGTATG
TTCCCTTCGC AACAGTCGGT TGAAGAAATT GGCCGTTTAG AGGAAGAACG TCGCTTGTGT
TATGTCGGCA TGACCAGAGC GATGAGCAAA CTCTATTTAT GCCACGCCGA AAGTCGCCGT
TTATATGGAC AAGAAAAATT CCATAAAGCG AGCCGATTTT TACGAGAATT ACCTGAAGAT
TGTATCGAAG AAATTCGCAT GCAGTCTCAG GTAAAGCGTC CCAGTAAAGT AGGTAAATTT
TCAAATACCT TTACACTTGA AACCTTTGAA AATACTGGCT TTAAGTTGGG GCAGCAGGTT
AAGCATGCTA AGTTTGGTGA AGGTGTGGTC CTTAACTATG AAGGCAGTGG TGCTCAATCA
CGTATTCAGG TGAATTTCGC CGATGTTGGT AGCAAGTGGT TGGTGGTGGA ATACGCTAAT
TTACAAGCGG TTTAA
|
|---|
| Protein sequence | MDVSELLDSL NDKQRDVVAA PKQNMLILAG AGSGKTRVLV QRIAWLMQVE GISSHSILAV
TFTNKAAAEM RARVEQVTNG NTHGMWIGTF HGLAHRLLRM HFQEANLPQS FQVLDSDDQL
RLIKRIVRSL ELDEKKWPPK QFVWYINGKK DEGLRPQHID AQFDPTEELF VKVYKAYQET
CDRAGLVDFA ELLLRAHELW LKNPALLDHY QQRFGHILVD EFQDTNAIQY AWLTMLGKAR
SKVMIVGDDD QSIYGWRGAK IENIERFLQE YDDAKTIRLE QNYRSTANIL KSANQLICNN
NNRMGKELWT DGEAGEKISI YTAFNEIDEA RFIAGRIKQW RDDGGKLDEI AILYRSNAQS
RLLEEALLQG QLPYRIYGGQ RFFERQEIKD ALAYMRLINN RDDDAAFERV INTPTRGIGN
QTLSLVRDAA RGLEVTMWQA CQQMLKAEQL KGRGAKTITA FIQLIEQLED DTTNLDLDQQ
ANFIINHSGL KAMYQAEKGE RAAQRIENLN ELVTACQTFE SDPELAEEQT PLTAFLTHAA
LESGESQADE FEAAVQLMTM HSAKGLEFPL VFIAGLEEGM FPSQQSVEEI GRLEEERRLC
YVGMTRAMSK LYLCHAESRR LYGQEKFHKA SRFLRELPED CIEEIRMQSQ VKRPSKVGKF
SNTFTLETFE NTGFKLGQQV KHAKFGEGVV LNYEGSGAQS RIQVNFADVG SKWLVVEYAN
LQAV
|
|---|
| |