Gene CPS_0029 details

Gene Information

• Locus tag: CPS_0029
• ID: 3521459
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: +
• Start bp: 31667
• End bp: 32380
• Gene Length: 714 bp
• Protein Length: 237 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 637282496
• Product: OmpW family outer membrane protein
• Protein accession: YP_266811
• Protein GI: 71280990
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG3047] Outer membrane protein W

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAAA CTTTATTAAC CATAGCTTTA CTATCAAGTC TTTCAACTAC AGCTTTTGCA 
AACCAAGCTG GTGACATCCT CGTTCGTGGT GGTGTTACTA TGGTTTCACC TAGTAGTAAT 
GAAGCAACGG TACTTTTAGA TGGATCTGCA ACACCGTTAT CAGTTTCAGT AGACGATAAT 
ACCCAGTTTG GTTTAAACCT GGTTTACTTT TTTGATAGTA ATTGGGCAAT TGAATTATTA 
GCGGCAACGC CATTTACCCA TGATGTGATA TTACATGATC CAAAAGGCGC AACGAATGAT 
ATTTATGGTA TTGATTTAAA TGGTGCTACT TTGGCAGAAG TAAGCCATTT ACCGCCAACA 
CTAAGCGCGC TCTATTATTT TGATACGGGC ACTGCATTTA AACCTTATGT TGGTGTTGGT 
GTGAACTACA CGATATTTTT CGATGAAGAC TTTACTTCAA CGCCTCAAGC GGCAGGTTTT 
AGTAATCTAG AACTTGATGG TTCATGGGGT TACTCTGTTC AGCTTGGTCT TGATTATGAG 
CTAGATAAAA ATTGGTCTGT TAATGTTTCA GCTCGTTACA TTGATATTAA CACCAAAGCT 
ACGTTTAATA TCGACAATGC TTTAGGAGTA GATGGCGGCC TAGTTGGCAA AGGTAGTGCA 
AGCGTTGATG TTGATCCTAT GGTTTATTCA GTAATGCTTG GTTACACATT CTAA 

 

Protein sequence

MKKTLLTIAL LSSLSTTAFA NQAGDILVRG GVTMVSPSSN EATVLLDGSA TPLSVSVDDN 
TQFGLNLVYF FDSNWAIELL AATPFTHDVI LHDPKGATND IYGIDLNGAT LAEVSHLPPT 
LSALYYFDTG TAFKPYVGVG VNYTIFFDED FTSTPQAAGF SNLELDGSWG YSVQLGLDYE 
LDKNWSVNVS ARYIDINTKA TFNIDNALGV DGGLVGKGSA SVDVDPMVYS VMLGYTF