| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0016 |
|---|
| Symbol | |
|---|
| ID | 3520852 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 17757 |
|---|
| End bp | 20696 |
|---|
| Gene Length | 2940 bp |
|---|
| Protein Length | 979 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637282483 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_266798 |
|---|
| Protein GI | 71280386 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTAT CTAAAGTACT CACGGCCATC ACGCTAGCAC TCAGTAGTAT AGCTTTTAGT
AGTCAAGCAG AACTTGTTGA TAATACTAAA AATTGGCAAA CTTTTGAAAC TGAAAACTTT
CGTGTACATT TCACCCCAGA ATACCGTCAG TGGGCTTTAT CAAGTGCAAG GGAAATGGAA
GTTGTTCGCC AACTCATTAA AGATCAACAA GGTCGCGTTA TCACAGAAAA GGTCGATGCT
TATATCGTTG ACCCCTACAA TGCCGCCAAT GGTTTTGCCT TCCCGCTAAG TCACCGACCT
TACATGGCTT TCTTTGCAAC CCCTCCACAA TCAGACACTA TTATTGCTAA CTCTACGGGT
TGGCAACAAC TATTAGTACT GCATGAGTAT GTCCATCTGG TTCATTTAGC CCAAAAGAGC
CGCAGTAATT GGCGTAATAA CGTAGCCAAT TGGTATGATT TTTATGATGC TTCACAAATT
AATGGTGAAC GTTGGGTAAG TGAAGGTTAT GCCACGTTGT TAGAGTCTAA GCTGACCGGT
CGCGGCCGAT TATTTAATAA TCAGGTGGAA GCCATAATCC AGAAATTTGC TCGACAAGGT
GCTTTACCTA GTTATAAGCA ACTAAATTCA GGCGATGATA GTTTCATGTC TGGCTCAATG
GCTTATCTCG TTGGTGTACG CTATTTAAAG TGGTTAGAAG AGAACTACGG TGAAGAAACC
CTTGATGCGG TTTGGACTCG TTGGTCTGCT GTTGAACAAC GTGACTTTGA AAAGTCGTTC
AAAGGAGTAT TCCCAGATAC AGCGAAAAAC CTTTATCAAC GTTTTGTTGC TGAATATACC
TACAAAGCCA TGCAACATGA AATTAAGCTT ACGGCGCAAA GTAATGAGGA TAATCGTTCA
AAATTATGGT TAGATTTATC CGGTTACACT AGTGACCCGA GTTTAAGTCC GCAGGGTGAT
TACCTTGCTA TTGTAGAAAC CCAACGAACA GAAGAAGGTA ATACCACCAA GTTAAATATT
TATAAAACAG GTGAAAACAC AAAAAGCATT GAAGAGTTTA CCAAAAGATC CAAAGAGTTA
TTAGCAGATG ATCCGCAAGA TATTGCTGAT AAAGCGCCCA GTGTTTTTAA ACGTGAAGTC
GCTTATACCT TAAATCAAAG AAACAACCGC GGTATAAAGA ACCCACGTTG GCTTAATAAA
GATACCCTTA TCTATGGAGC CAGTAGCTTA ACGAAGAAAA ACAGTTATCA TCAAGATCTC
TTTTCTTGGC ACTTACCGAC AAACACGATA AAACAACTGA CAACCAGCGC AAATATCCGT
CGCTTTGATA TTAGTAACGA TGGACAATTT ATTATTGCTG AGCGCAGCCG TGTTGGTAAC
TCACAGTTAG TTAAAGTAAG TTTGGCGGCT GAATCTTTAG GTGAAATAAT TGCAGAACTA
ACACCACCAA GCCTTGAGCA AGTTTATGAT TTTCCGCGAC TTCGCCCAAC ACTTGATGGC
TCCACTTCAG ATAGTTTTGC TTATGTTAGC TCAAGTTTGA ATAATAAATG GCAATTAAAA
GTTCGCCAAT TTGAAGATGA ACAAGAGCAA ATAATACCCT TACCCGAAAA CTATCAATTC
CTTTCTTTCC CTGAATGGTC TAAAGATGGT CAATCACTGT ATTTTGTTGC CGGTTTAGAT
AGTGCAACGC GCTTATACAA GTATGATTTT TTAAATAAAG TTTTGTCGAC TGTGACCTCA
GGAGAACAAG TCATAACTTG GCCTATGGTT AACGGAGATA ATGAACTCCT TCATTTAGCC
ATTAATGCCC AAGGGCCTGA TGTTTATCAG CTTGACTTGA ACAAAGCCAA TAACCAAATA
ATTACAAACA CCACCACATC TTCGGCAATG ACGGTTAACT TAGCTGACAG TTTAAAACTG
TCTGAGGCGA CTATCGCTGT TGATGAGAGT ATTGGCGAAC AATCAGCCTA TGGCATTGGC
CCTCAACAAG GGACAATAAC GATCGCTGAA AGTATTTATT CCGCCAGTAG CAGTATGTTA
GAAGTCGGTT ATAAATCAGG TGATGTACTT TCTCGTTTTG ATTGGCAAGT CAATGCTAGC
CAAGATATTT TCAGTAGCAT TATCTCTGGC GCATCAGGGG CAATTCGCTG GCAAGGCTGG
CCGGTAAAAT TACTGGCTCA CGGTTATGTC TTTGACTTGA AAACAGATAA ACAGGATAGT
GATGCGTTAA ACTTAGGTAA AACAACAGAA AAAGGGCTGT TACTTGAAGC TCGCTATCCC
TATAGCATAG AGACACTCGC TGTTGATATA TTTGCACAAA TGCAAGCATC ACAATATGAG
AATAGCCAGC ATGTGGATTT TTCTAGCTTA TCTTTTTCTC TAGGTATTGA ACAAAGTTGG
TCACACGACC AACAAAGCTG GGGTATTTCA CAAGCAATAA ATGCCCAATT AATTTCGGCT
CAAGATGATC AAGCAGAAAT TAATGGTAAT GATGGTAGTT ATACCGGTAG CAATGGCCTA
GCTAGCTTGA ATGCTCATAT ACAGGGCTTT ACTCTAGGTT TTAAGTACCT TTGGGCACAA
CGCTCAGAAG ATGCTGGCGA TATCCTCAGT TTGGGTGGCT ATTCTTCAAC GCTAATCCAA
GAAAAAGCGC ACATCAATAA ACAACTTGCA CCTGAATTGG CCTTTTATCG TCAACTGGGT
AATGACTATC AAGCTTATCA AGCATATATG CCCTTAGGTA TTGTGGAAGT ATTTTATACT
CGCCATGAAA TGACTGAGCG AGATATTATC GATAGTTACG GTGTTAAAGG CTCACTCAAC
AATGACTTTG GTTTTACTGG GATAACCAAC GTAGCCATTA ATTATGGTAT CGCACAAGTT
AATCCAGAGA ATGAAAGTTC AGATACCCAA GGCTGGGTAG CCCTTAGTTA TAAATGGTAA
|
|---|
| Protein sequence | MKVSKVLTAI TLALSSIAFS SQAELVDNTK NWQTFETENF RVHFTPEYRQ WALSSAREME
VVRQLIKDQQ GRVITEKVDA YIVDPYNAAN GFAFPLSHRP YMAFFATPPQ SDTIIANSTG
WQQLLVLHEY VHLVHLAQKS RSNWRNNVAN WYDFYDASQI NGERWVSEGY ATLLESKLTG
RGRLFNNQVE AIIQKFARQG ALPSYKQLNS GDDSFMSGSM AYLVGVRYLK WLEENYGEET
LDAVWTRWSA VEQRDFEKSF KGVFPDTAKN LYQRFVAEYT YKAMQHEIKL TAQSNEDNRS
KLWLDLSGYT SDPSLSPQGD YLAIVETQRT EEGNTTKLNI YKTGENTKSI EEFTKRSKEL
LADDPQDIAD KAPSVFKREV AYTLNQRNNR GIKNPRWLNK DTLIYGASSL TKKNSYHQDL
FSWHLPTNTI KQLTTSANIR RFDISNDGQF IIAERSRVGN SQLVKVSLAA ESLGEIIAEL
TPPSLEQVYD FPRLRPTLDG STSDSFAYVS SSLNNKWQLK VRQFEDEQEQ IIPLPENYQF
LSFPEWSKDG QSLYFVAGLD SATRLYKYDF LNKVLSTVTS GEQVITWPMV NGDNELLHLA
INAQGPDVYQ LDLNKANNQI ITNTTTSSAM TVNLADSLKL SEATIAVDES IGEQSAYGIG
PQQGTITIAE SIYSASSSML EVGYKSGDVL SRFDWQVNAS QDIFSSIISG ASGAIRWQGW
PVKLLAHGYV FDLKTDKQDS DALNLGKTTE KGLLLEARYP YSIETLAVDI FAQMQASQYE
NSQHVDFSSL SFSLGIEQSW SHDQQSWGIS QAINAQLISA QDDQAEINGN DGSYTGSNGL
ASLNAHIQGF TLGFKYLWAQ RSEDAGDILS LGGYSSTLIQ EKAHINKQLA PELAFYRQLG
NDYQAYQAYM PLGIVEVFYT RHEMTERDII DSYGVKGSLN NDFGFTGITN VAINYGIAQV
NPENESSDTQ GWVALSYKW
|
|---|
| |