| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0011 |
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| Symbol | |
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| ID | 3519259 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 11977 |
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| End bp | 13908 |
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| Gene Length | 1932 bp |
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| Protein Length | 643 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 637282478 |
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| Product | putative soluble lytic murein transglycosylase |
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| Protein accession | YP_266793 |
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| Protein GI | 71279252 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.868574 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAAAGTA TTCTAAAGGT TATATTACTG TCTGTTTGCA CACTTTCGTC AATTAATATT
TTGCAAGCAA ATGATAGTTT GCAAATATTG ACAGATGTTG GACAACAAAG AATATTCTTA
AAAGCTGAAA AATTATTAGT AAAAAGTAAT TCTCAACAGT ATCAAAGCCT CTATAATCAG
CTGTATTACT ACCCTCTACA ACCGTATTTA GATCAGCGCC GTCTAATAGA AAACATGCAG
TTATCTTCAG CAGGGGAAAT AGCCACTTTC TTAGAAAAAC ATCAACATTC GCCATTGGAT
TGGCCATTAC GAAAAGCATG GTTAATGTTC TTAGCCAAAA AGAATAAGGG CGCACTTTTC
CTTGAGTTTT ATCAAAGTAC TCGTAATAAC GTACTTACTT GCCACAAACT CAACTTTTCT
TTAGAGGCGG GTCTACCCTC AAATGTTGTA TTACCTCAAG TAACAAAACT ATGGTTAGTC
GGTAAATCGT TAGATAAAGT TTGTGACCCA ATAATTGAAC AATGGCAACA AGCGGGTTAT
AGAACCGATG AAATTGTATG GCAACGTATA GGGTTAGCGG CAGATGGCGG AAAACATACC
TTAATTCCTT ATTTAACAAA CTTACTGCCA AAGGATCAGC AATATTTAGG ACGACTGTGG
CATCAAGTAA GACGTGATCC TGCAACCGTA ACGAGACAGT ATAAGTTTAT TAAAAAATCG
ACAAAAGAAA GCCAAATATA TACTTATGGT ATCAAACGCT TAATCTGGCG TGATCCTGAT
AAAGCATTAG CCAGTTTTAA AAAGGCGCAG CAAATATTCA CTTTTTCAAC AACACAACAT
CAGCAAATAG TCGCAAAATT TGCCGTGGCT TTAGCAAGTA AAAATCATCC ACAAGCTAGG
ATTTGGTTAG AAAAGTTAGA TCCACTGAAC ATAGATAGTA ATATTATGCA GTGGCAGTTA
ACTGAAGTTT TAAAGCAACA AAATTGGCAA CTTGTCTTGA AAGAACTGGC AACAATGCCT
GAAAAATATA AAGCAAAATT ACAGTGGCGG TACTGGTATG CAAGAGCATT GATTGCAACC
GATGATTTAG AACATGGCCA AGATGTAATG AATGAATTAT CAAGTAAACG TCATTATTAT
GGTTTTTTGG CTGCTAGCTA CCTAGAAACC CCCGTCAGTT TGCAAGATAG TCCATTAGCG
ATCACTAGCC AGGAGAAAAA CGCTATATTG TTGCACCCCT CAGCTAAGCG GGCATTTGAA
TTTTATTATT TAGGCCGTTA TGTCAAAGCG CGCAGAGAGT GGCGTTATTG GCTTACACAA
CTGAATAATC GTGAAAAATT AGTCGCTGCA AAACTCGCTA ATGAAAATGG TTGGTTTGAC
CGAGCAATAT TCACCTTGTC AAAAGTTGGT TATATGGATG ATGTTGAGTT GAGATTTCCA
AAAGCATTTG ATAAGAAGAT TAACCAGCAT GCCAAGAAGC AAGCAATTAA CCCTGCGTGG
GCTTTTGCTA TCGCCAGACG TGAAAGTTCG TTTATGACAG ATGCTCGTTC ACCGGTTGGA
GCCAAGGGCT TAATGCAGCT TATGCCAAAT ACAGCAAAGC AATTAAAACG CGGTAGTGTT
AGTCGACAGT ATTTGTACAA TGCGGATAAT AATATCAAAT TAGGAACAAA GTACTTACGT
AAGCTTCTGG ATAAAAACAA AGGAAATCAG ATTCTTGCTA CAGCTTCTTA CAATGCAGGA
CCTCATAGAG TAAAGGGGTG GTTAAAGAAT AGCCATGCGA TGCCTGCAGA TATTTGGATA
GAAACCATTC CCTTTAAAGA GACTCGTAAT TACGTAAAAA GTGTTTTAGC GTATCAAGAG
ATTTATCAAC ATAAACCAGG GCAGGTTAGT CAGATTTTTG AGCAAGTCAT TAATATGAGT
ATTGGTGATT AA
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| Protein sequence | MKSILKVILL SVCTLSSINI LQANDSLQIL TDVGQQRIFL KAEKLLVKSN SQQYQSLYNQ
LYYYPLQPYL DQRRLIENMQ LSSAGEIATF LEKHQHSPLD WPLRKAWLMF LAKKNKGALF
LEFYQSTRNN VLTCHKLNFS LEAGLPSNVV LPQVTKLWLV GKSLDKVCDP IIEQWQQAGY
RTDEIVWQRI GLAADGGKHT LIPYLTNLLP KDQQYLGRLW HQVRRDPATV TRQYKFIKKS
TKESQIYTYG IKRLIWRDPD KALASFKKAQ QIFTFSTTQH QQIVAKFAVA LASKNHPQAR
IWLEKLDPLN IDSNIMQWQL TEVLKQQNWQ LVLKELATMP EKYKAKLQWR YWYARALIAT
DDLEHGQDVM NELSSKRHYY GFLAASYLET PVSLQDSPLA ITSQEKNAIL LHPSAKRAFE
FYYLGRYVKA RREWRYWLTQ LNNREKLVAA KLANENGWFD RAIFTLSKVG YMDDVELRFP
KAFDKKINQH AKKQAINPAW AFAIARRESS FMTDARSPVG AKGLMQLMPN TAKQLKRGSV
SRQYLYNADN NIKLGTKYLR KLLDKNKGNQ ILATASYNAG PHRVKGWLKN SHAMPADIWI
ETIPFKETRN YVKSVLAYQE IYQHKPGQVS QIFEQVINMS IGD
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