| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp1622 |
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| Symbol | rcsC |
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| ID | 1223934 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | - |
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| Start bp | 2041968 |
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| End bp | 2045264 |
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| Gene Length | 3297 bp |
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| Protein Length | 1098 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637241485 |
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| Product | capsular synthesis two-component sensor kinase and response regulator transcription regulator protein |
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| Protein accession | NP_523181 |
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| Protein GI | 17549841 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0784] FOG: CheY-like receiver |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.609482 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCCAAA GGCTACTGAC CAAGACCGGC CGATATTCCA GGCGTGTGCT CTACGGGTGC
ACGGCCGCGC TGTCCATCGC GATCGTGGGG GCCGTGCTGC TGCTCGGCCG CGGCATCATC
GATCAGTACG GCGACAGGCA GGTCGCGCGG TTCGTCAGGA CGAGCGGCGA GGTGCGGACC
GAGGTGGACG GACTGTCCGC AAGGCTGGCG CAGTTCGCCG ATCTCTACGA AGGGGTCTGG
AATCTGCGCC AGAACGACGT GGTGCCAACA CGGCGCTATG CCGGCAAGCT TGCCGCCGAC
CGGGGCGCGA CCGTGACCGG AGCGGACCTG ACCGCCACGC CGGTCACGCT GATCAGCTCG
CTCGACAGGC CGGCCGACGG CGCGCGCCTG GCAATGGCGC TGCGGGTGCT GCGCGACGTT
TCCGGCGCGC CGCTGATGGA TGCGCAGAAG CTGGGCGTGA CGCTCGACGG GTTCCTGTAC
ACGCCGGATG CGACGTTTCT GGCGGCCTTT CCGGCGCTGC GTCCGGCCGA TCTGCGGAGC
GCGCGCGAGC AGGGGCCGCA GCCCTTCATC CGCGAGCGCA TCGCCGCCGT GGAGCAGCGC
ATTGCGTCGT CGGCGCCGGA GGCCGTTCGC GGCCGCCGTC CGCTGTGGTA TCCGGCGGAC
GAGACCAACG GGCATGCCTC GGTATCGCAG CTCATCGTGC CGATGTACCG CGACAACGCG
CGCGTTCTGA CGATCGCGCT CACGTTGCCG GATGCGCAGT TCACGCGCTT CTTCCTGCGC
AAGGAAAGCC GCAGGCCGGG GTTCTTCCTG CTGAGCCAGA CCGGCCAGCG GAGCCTGGGC
GATCTGCCGG CCGACCTGGA GGAAAGGCGG CTGCTGGACA CGGTTCTGGC GAATGCCGAC
TGGTCGCGGC AGGCCGGCGC CGAGCCGACC ACCTTCTACA AGGATGGCGT CTTCTTTGTG
AGCCGGCGTA TCGCCGGGCC CGACTGGATC GCGGTGTATG CGTATCGATG GCAGGACGTG
TGGTCCGACC TCCAGCATGA ATTCTTCGCC GGCATGGTCT TCTGCGTGCT GGTGCTCGGG
TTGCTGTGGG CCACGGCCGC CTACTTCGAT CTGCGTGTGA CCCGGCCCCT GCTCAGCGAT
GCGAAGAAGC TGATCGAAGC CGAGCATTTC AGCAAGGCCA TCATCGATAC CTTGCCGATC
GGGATCGGTG TCTACTCGCC GGAGACCGAT TCGATCCTGC TGGAGAACAG CGTGGCGGTC
CGCATGCTGG GCAATGTCTC CAACGAGCAG CGGCTGCGCT TCTACCGGTA CGTCATGCAC
GAACGCGATG CCGAGCCGGT GCCGGGCGCA CGGCACTCCT TCATCGAGGT GCGATGGGAG
CGCGCCGAAG GGCAGAGCAG CTATATCGGC GTGGCGTCGT CATGGACCCG GTTCGGCGGA
CGCTCGGCCG TCCTCCTCGG GCTGGTGGAC ATGAACGAGC GCAAGGCCAA CGAGATCCTG
CTGATGGAGG CGAAGCAGAC CGCCGACGAG GCCAACCGGG CCAAGTCGAT GTTCCTGGCC
ATCGTCGGCC ACGAGATCCG GACGCCGCTG CACGGCGCGA TGGGCCATCT GGAATTGCTG
GCGCGCAGCG CGCTCAGCCT GGAGCAGCGG GAATGGGTGG ACATGACCAG CCGCTCGTTC
GATGCCCTGC TGACACTCGT CAACGATCTG CTCGACTCGA CCAAGCTCGA GGCCAACGCG
CTGCAGATCA GTCCGGTGCC GATGTGTCCG AACGAAGTGC TCGAACGATG CGCGCGCAGC
TTCGGTGCGG CGATTGTTCA GGGCGGTGTC GCCTTCCACT GCATCACCGA TCCGGACCTC
GACCTCGTCG TCGACGGCGA TGACCAGCGC CTGACGCAGA TCCTGCAGAA CCTGCTGAGC
AACGCGGCCA AGTTCACCGA ACGGGGCACG ATCACGATCG CCTCGCGTTG CCTGAAACGG
GAGGACGGGA AGGTCTGGGC ACGCTTCGAA GTGGCCGATA CCGGCATCGG GATCCCGGCC
GCGATGCAGT CGACCATTTT CAATCCGCTG GCGCAGGCCG ACGACAGCAT CAGCCGGCGC
TTTGGCGGTA CCGGCCTCGG CCTGTTCCTG TGCCGCAATC TCGCGCATCT GATGGGCGGG
CGGATCAGCG TGCGCAGCGA GCCCGGCATC GGCAGCGCGT TCCGTGTGGA CCTGCCGTTC
GCGCAGAACA CGCGGGCGCC GGCGCCCCCG CCCCCGGTGC TGACCGGACT ATCGGTCGAA
CTGCTGTGCC CGGTTTCGCA GTGGCGCGGC ATGCTGGCCG AGCGCCTGCG GCGCTGGGGG
GCGACCGTCC GGCCGGCGGA GGCTTCGGCC GCCGAGCCGT TGCATATCCG CCTGGCCGTG
GAGGCGGACG GCCGCGCATG GCATGCGGCC GACCTGGGCA CGGTGCCGCT GCTGGGCACG
GTATTCGTCA CGGCCAAGGG GCCGCTGCAT GCGCACCGCG ATGGGCAGAA GATCGAAGTC
AGCTCGTTCA CGCGCGAAGG GCTGCTGGCC GCGTTGACGG AATTGACCGG CGCCGCCGCG
AGACCGGCCG AGACGCCGGT GTCCATGGCC GTCGACGAAG GCCTCGGAGC GGATCTGGAT
ATCCTGGTGG CCGAGGACGA TGCGGTCAAC CGTACCCTGA TCCGGCACCA GCTGGCCGCC
TTGGGTTGCC AGCGCGTGCG GGTGGCCGTG GATGGCGTGG AAGCGCTCGA GATGTGGCTC
GAGCGGCGCG CGGACCTGGT CATCACCGAT CTGGGCATGC CGCGGCTGGA CGGCATCGGC
CTGCTGCACA AGCTGCGCGA GCTCGACCCG CGGGCGCGCG TGATCGCCAC CTCGGCTTCG
GTCTCGGCGG AGATCAAGGC CGATGTCGAG CAGTTCTCGA GTCTGCTGCA GAAGCCGGTC
TCGCTGGGCG ATCTCAGGCG CATCCTGAGG CAGGAGATGC TGTCGCGAAC GGCTTCGCCC
ACGCCGGCCG TGGCCGAACC GGTGCGCGCG GACGCGCTCG ATGCCCTGCT GCGCCAGGCC
TTCCGCACCG AATGGAACAA GGAGCGCAAA TCCATCGAGC AGGCGCTGGC CGGCAAGGAC
ATGGATGCGC TGCGCCGGCG TGTGCACCGG TTGCAGGGTG CGCTGATGGC ACTGGGCGCC
GACGCACTGG TCGAGGAGCT GCGCGGCCTC CAGGACATCT ATTCCCGGGC GGATTGGGCG
CTGATCGCCA TCCGCTGCCA CCAGCTGCTG GCGCACGTGG ACGCGTCAGT GGGCTGA
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| Protein sequence | MPQRLLTKTG RYSRRVLYGC TAALSIAIVG AVLLLGRGII DQYGDRQVAR FVRTSGEVRT
EVDGLSARLA QFADLYEGVW NLRQNDVVPT RRYAGKLAAD RGATVTGADL TATPVTLISS
LDRPADGARL AMALRVLRDV SGAPLMDAQK LGVTLDGFLY TPDATFLAAF PALRPADLRS
AREQGPQPFI RERIAAVEQR IASSAPEAVR GRRPLWYPAD ETNGHASVSQ LIVPMYRDNA
RVLTIALTLP DAQFTRFFLR KESRRPGFFL LSQTGQRSLG DLPADLEERR LLDTVLANAD
WSRQAGAEPT TFYKDGVFFV SRRIAGPDWI AVYAYRWQDV WSDLQHEFFA GMVFCVLVLG
LLWATAAYFD LRVTRPLLSD AKKLIEAEHF SKAIIDTLPI GIGVYSPETD SILLENSVAV
RMLGNVSNEQ RLRFYRYVMH ERDAEPVPGA RHSFIEVRWE RAEGQSSYIG VASSWTRFGG
RSAVLLGLVD MNERKANEIL LMEAKQTADE ANRAKSMFLA IVGHEIRTPL HGAMGHLELL
ARSALSLEQR EWVDMTSRSF DALLTLVNDL LDSTKLEANA LQISPVPMCP NEVLERCARS
FGAAIVQGGV AFHCITDPDL DLVVDGDDQR LTQILQNLLS NAAKFTERGT ITIASRCLKR
EDGKVWARFE VADTGIGIPA AMQSTIFNPL AQADDSISRR FGGTGLGLFL CRNLAHLMGG
RISVRSEPGI GSAFRVDLPF AQNTRAPAPP PPVLTGLSVE LLCPVSQWRG MLAERLRRWG
ATVRPAEASA AEPLHIRLAV EADGRAWHAA DLGTVPLLGT VFVTAKGPLH AHRDGQKIEV
SSFTREGLLA ALTELTGAAA RPAETPVSMA VDEGLGADLD ILVAEDDAVN RTLIRHQLAA
LGCQRVRVAV DGVEALEMWL ERRADLVITD LGMPRLDGIG LLHKLRELDP RARVIATSAS
VSAEIKADVE QFSSLLQKPV SLGDLRRILR QEMLSRTASP TPAVAEPVRA DALDALLRQA
FRTEWNKERK SIEQALAGKD MDALRRRVHR LQGALMALGA DALVEELRGL QDIYSRADWA
LIAIRCHQLL AHVDASVG
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