Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSp1622 |
Symbol | rcsC |
ID | 1223934 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | - |
Start bp | 2041968 |
End bp | 2045264 |
Gene Length | 3297 bp |
Protein Length | 1098 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637241485 |
Product | capsular synthesis two-component sensor kinase and response regulator transcription regulator protein |
Protein accession | NP_523181 |
Protein GI | 17549841 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG0784] FOG: CheY-like receiver |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.609482 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCCAAA GGCTACTGAC CAAGACCGGC CGATATTCCA GGCGTGTGCT CTACGGGTGC ACGGCCGCGC TGTCCATCGC GATCGTGGGG GCCGTGCTGC TGCTCGGCCG CGGCATCATC GATCAGTACG GCGACAGGCA GGTCGCGCGG TTCGTCAGGA CGAGCGGCGA GGTGCGGACC GAGGTGGACG GACTGTCCGC AAGGCTGGCG CAGTTCGCCG ATCTCTACGA AGGGGTCTGG AATCTGCGCC AGAACGACGT GGTGCCAACA CGGCGCTATG CCGGCAAGCT TGCCGCCGAC CGGGGCGCGA CCGTGACCGG AGCGGACCTG ACCGCCACGC CGGTCACGCT GATCAGCTCG CTCGACAGGC CGGCCGACGG CGCGCGCCTG GCAATGGCGC TGCGGGTGCT GCGCGACGTT TCCGGCGCGC CGCTGATGGA TGCGCAGAAG CTGGGCGTGA CGCTCGACGG GTTCCTGTAC ACGCCGGATG CGACGTTTCT GGCGGCCTTT CCGGCGCTGC GTCCGGCCGA TCTGCGGAGC GCGCGCGAGC AGGGGCCGCA GCCCTTCATC CGCGAGCGCA TCGCCGCCGT GGAGCAGCGC ATTGCGTCGT CGGCGCCGGA GGCCGTTCGC GGCCGCCGTC CGCTGTGGTA TCCGGCGGAC GAGACCAACG GGCATGCCTC GGTATCGCAG CTCATCGTGC CGATGTACCG CGACAACGCG CGCGTTCTGA CGATCGCGCT CACGTTGCCG GATGCGCAGT TCACGCGCTT CTTCCTGCGC AAGGAAAGCC GCAGGCCGGG GTTCTTCCTG CTGAGCCAGA CCGGCCAGCG GAGCCTGGGC GATCTGCCGG CCGACCTGGA GGAAAGGCGG CTGCTGGACA CGGTTCTGGC GAATGCCGAC TGGTCGCGGC AGGCCGGCGC CGAGCCGACC ACCTTCTACA AGGATGGCGT CTTCTTTGTG AGCCGGCGTA TCGCCGGGCC CGACTGGATC GCGGTGTATG CGTATCGATG GCAGGACGTG TGGTCCGACC TCCAGCATGA ATTCTTCGCC GGCATGGTCT TCTGCGTGCT GGTGCTCGGG TTGCTGTGGG CCACGGCCGC CTACTTCGAT CTGCGTGTGA CCCGGCCCCT GCTCAGCGAT GCGAAGAAGC TGATCGAAGC CGAGCATTTC AGCAAGGCCA TCATCGATAC CTTGCCGATC GGGATCGGTG TCTACTCGCC GGAGACCGAT TCGATCCTGC TGGAGAACAG CGTGGCGGTC CGCATGCTGG GCAATGTCTC CAACGAGCAG CGGCTGCGCT TCTACCGGTA CGTCATGCAC GAACGCGATG CCGAGCCGGT GCCGGGCGCA CGGCACTCCT TCATCGAGGT GCGATGGGAG CGCGCCGAAG GGCAGAGCAG CTATATCGGC GTGGCGTCGT CATGGACCCG GTTCGGCGGA CGCTCGGCCG TCCTCCTCGG GCTGGTGGAC ATGAACGAGC GCAAGGCCAA CGAGATCCTG CTGATGGAGG CGAAGCAGAC CGCCGACGAG GCCAACCGGG CCAAGTCGAT GTTCCTGGCC ATCGTCGGCC ACGAGATCCG GACGCCGCTG CACGGCGCGA TGGGCCATCT GGAATTGCTG GCGCGCAGCG CGCTCAGCCT GGAGCAGCGG GAATGGGTGG ACATGACCAG CCGCTCGTTC GATGCCCTGC TGACACTCGT CAACGATCTG CTCGACTCGA CCAAGCTCGA GGCCAACGCG CTGCAGATCA GTCCGGTGCC GATGTGTCCG AACGAAGTGC TCGAACGATG CGCGCGCAGC TTCGGTGCGG CGATTGTTCA GGGCGGTGTC GCCTTCCACT GCATCACCGA TCCGGACCTC GACCTCGTCG TCGACGGCGA TGACCAGCGC CTGACGCAGA TCCTGCAGAA CCTGCTGAGC AACGCGGCCA AGTTCACCGA ACGGGGCACG ATCACGATCG CCTCGCGTTG CCTGAAACGG GAGGACGGGA AGGTCTGGGC ACGCTTCGAA GTGGCCGATA CCGGCATCGG GATCCCGGCC GCGATGCAGT CGACCATTTT CAATCCGCTG GCGCAGGCCG ACGACAGCAT CAGCCGGCGC TTTGGCGGTA CCGGCCTCGG CCTGTTCCTG TGCCGCAATC TCGCGCATCT GATGGGCGGG CGGATCAGCG TGCGCAGCGA GCCCGGCATC GGCAGCGCGT TCCGTGTGGA CCTGCCGTTC GCGCAGAACA CGCGGGCGCC GGCGCCCCCG CCCCCGGTGC TGACCGGACT ATCGGTCGAA CTGCTGTGCC CGGTTTCGCA GTGGCGCGGC ATGCTGGCCG AGCGCCTGCG GCGCTGGGGG GCGACCGTCC GGCCGGCGGA GGCTTCGGCC GCCGAGCCGT TGCATATCCG CCTGGCCGTG GAGGCGGACG GCCGCGCATG GCATGCGGCC GACCTGGGCA CGGTGCCGCT GCTGGGCACG GTATTCGTCA CGGCCAAGGG GCCGCTGCAT GCGCACCGCG ATGGGCAGAA GATCGAAGTC AGCTCGTTCA CGCGCGAAGG GCTGCTGGCC GCGTTGACGG AATTGACCGG CGCCGCCGCG AGACCGGCCG AGACGCCGGT GTCCATGGCC GTCGACGAAG GCCTCGGAGC GGATCTGGAT ATCCTGGTGG CCGAGGACGA TGCGGTCAAC CGTACCCTGA TCCGGCACCA GCTGGCCGCC TTGGGTTGCC AGCGCGTGCG GGTGGCCGTG GATGGCGTGG AAGCGCTCGA GATGTGGCTC GAGCGGCGCG CGGACCTGGT CATCACCGAT CTGGGCATGC CGCGGCTGGA CGGCATCGGC CTGCTGCACA AGCTGCGCGA GCTCGACCCG CGGGCGCGCG TGATCGCCAC CTCGGCTTCG GTCTCGGCGG AGATCAAGGC CGATGTCGAG CAGTTCTCGA GTCTGCTGCA GAAGCCGGTC TCGCTGGGCG ATCTCAGGCG CATCCTGAGG CAGGAGATGC TGTCGCGAAC GGCTTCGCCC ACGCCGGCCG TGGCCGAACC GGTGCGCGCG GACGCGCTCG ATGCCCTGCT GCGCCAGGCC TTCCGCACCG AATGGAACAA GGAGCGCAAA TCCATCGAGC AGGCGCTGGC CGGCAAGGAC ATGGATGCGC TGCGCCGGCG TGTGCACCGG TTGCAGGGTG CGCTGATGGC ACTGGGCGCC GACGCACTGG TCGAGGAGCT GCGCGGCCTC CAGGACATCT ATTCCCGGGC GGATTGGGCG CTGATCGCCA TCCGCTGCCA CCAGCTGCTG GCGCACGTGG ACGCGTCAGT GGGCTGA
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Protein sequence | MPQRLLTKTG RYSRRVLYGC TAALSIAIVG AVLLLGRGII DQYGDRQVAR FVRTSGEVRT EVDGLSARLA QFADLYEGVW NLRQNDVVPT RRYAGKLAAD RGATVTGADL TATPVTLISS LDRPADGARL AMALRVLRDV SGAPLMDAQK LGVTLDGFLY TPDATFLAAF PALRPADLRS AREQGPQPFI RERIAAVEQR IASSAPEAVR GRRPLWYPAD ETNGHASVSQ LIVPMYRDNA RVLTIALTLP DAQFTRFFLR KESRRPGFFL LSQTGQRSLG DLPADLEERR LLDTVLANAD WSRQAGAEPT TFYKDGVFFV SRRIAGPDWI AVYAYRWQDV WSDLQHEFFA GMVFCVLVLG LLWATAAYFD LRVTRPLLSD AKKLIEAEHF SKAIIDTLPI GIGVYSPETD SILLENSVAV RMLGNVSNEQ RLRFYRYVMH ERDAEPVPGA RHSFIEVRWE RAEGQSSYIG VASSWTRFGG RSAVLLGLVD MNERKANEIL LMEAKQTADE ANRAKSMFLA IVGHEIRTPL HGAMGHLELL ARSALSLEQR EWVDMTSRSF DALLTLVNDL LDSTKLEANA LQISPVPMCP NEVLERCARS FGAAIVQGGV AFHCITDPDL DLVVDGDDQR LTQILQNLLS NAAKFTERGT ITIASRCLKR EDGKVWARFE VADTGIGIPA AMQSTIFNPL AQADDSISRR FGGTGLGLFL CRNLAHLMGG RISVRSEPGI GSAFRVDLPF AQNTRAPAPP PPVLTGLSVE LLCPVSQWRG MLAERLRRWG ATVRPAEASA AEPLHIRLAV EADGRAWHAA DLGTVPLLGT VFVTAKGPLH AHRDGQKIEV SSFTREGLLA ALTELTGAAA RPAETPVSMA VDEGLGADLD ILVAEDDAVN RTLIRHQLAA LGCQRVRVAV DGVEALEMWL ERRADLVITD LGMPRLDGIG LLHKLRELDP RARVIATSAS VSAEIKADVE QFSSLLQKPV SLGDLRRILR QEMLSRTASP TPAVAEPVRA DALDALLRQA FRTEWNKERK SIEQALAGKD MDALRRRVHR LQGALMALGA DALVEELRGL QDIYSRADWA LIAIRCHQLL AHVDASVG
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