| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp1611 |
|---|
| Symbol | gabD2 |
|---|
| ID | 1223923 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | - |
|---|
| Start bp | 2026926 |
|---|
| End bp | 2028407 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637241474 |
|---|
| Product | succinate-semialdehyde dehydrogenase oxidoreductase protein |
|---|
| Protein accession | NP_523170 |
|---|
| Protein GI | 17549830 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01780] succinate-semialdehyde dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0291547 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00849486 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCTCA CATTCGACCA GCTCCGCCAC ACCGGGCTGA TCCGCACCGA CAACCTGATC
GACGGCCGCT GGAGCGCCGG CGCCGACGGC GCGCGCTACG CCGTCACCGA CCCGGCCACC
GGCAGCATCA TCGCCCAGGT GGCCGACAGC AGCGCCGCCG ATGCGCGCGC CGCCACCGAT
GCCGCCGCGC GTGCCCTCCC GGCGTGGCGC GACACGCTGC CGGCCGAGCG CGCCGCCATC
CTGCGCCGCT GGCATGCGGC CATCGTCGCC AACGCCGATG CGCTGGGGCG GCTGATCTCG
CTGGAGCAGG GCAAGCCCTT TGCCGAGGGG CGCGGCGAGG TGATGTACGG CGCGTCCTAC
GTGGCCTGGT TCGCCGACGA AGCCACGCGC ATCTACGGCG ACCTCATCCC GCAGCAGCAG
CGCGGCAAGC GCATGAGCGC GATCAAGGAG CCGATCGGCA TCGTTGCCGC CATCACGCCG
TGGAATTTCC CGCTGGCGAT GATCGCGCGC AAGATCGCGC CCGCGCTGGC GGCGGGCTGC
ACGGTGGTCG CCAAGCCGGC CGAGGACACG CCGCTGACCG CGCTGGCGCT GGCCCAGCTC
GCGCAGGAGG CGGGCCTGCC GCCGGGCGTG CTGAACATGA TCGCCGCCTC GCGCGAGCGC
GGCGTGGCGG CGGTGGCGGA TTGGTTGCAG GACGGCCGCG TGCGCAAGAT CACTTTCACC
GGCTCCACGC CGGTCGGCAA GCACCTCGCG CGCGAATCGG CGGGCACGCT CAAGAAGCTG
TCGCTGGAGC TGGGTGGCAA CGCGCCGTTC ATCGTGTTCG ACGATGCCGA CCTCGATGCG
GCCATCGCGG GACTGCTGTC CGCCAAGTTC CGCAACGGCG GCCAGACCTG CGTGTGCCCG
AATCGCGTCT ACGTGCAGGC CGGCGTGTAT GACCGCTTCG CCGCCATGCT GGCCGCACGG
GTTTCGGCGC TGAAAGTCGC GCCCGCCACC GACCCCGACG CGCAGATCGG CCCGATGATC
AACGCCCGCG CCGTCGACAA GATCGAGCGC CACGTGCAGG ACGCCGTCGC ACACGGCGCC
CGCGTGCTGG CCGGCGGCAA GCGGTTGCCG GAAGTTGGCG CGCACTTCTA CGCGCCGACC
GTGCTGGCGG ACGCCCACCC CGGCATGGCG CTGTGCGGCG AGGAGACCTT CGGCCCGGTG
GTGCCGCTGT TCCGCTTCAC CGACGAGGCC GAAGCGGTAC AGGCCGCCAA CGACACGCCG
TTCGGCCTGG CCGCGTATTT CTATTCGCAG GATGTGCGCC GCATCGACCG TGTCGCGCAC
GCGCTGGAGG CGGGCATCGT CGGCATCAAC GAAGGCGCGC TCGCCAGCGA GGCCGCGCCG
TTCGGCGGCG TGAAGGAATC GGGCTACGGC CGCGAGGGCT CCAAGTACGG GCTCGACGAC
TATCTGTCGA TCAAGTATCT GTGCCAGGGC GGGTTGGCCT GA
|
|---|
| Protein sequence | MALTFDQLRH TGLIRTDNLI DGRWSAGADG ARYAVTDPAT GSIIAQVADS SAADARAATD
AAARALPAWR DTLPAERAAI LRRWHAAIVA NADALGRLIS LEQGKPFAEG RGEVMYGASY
VAWFADEATR IYGDLIPQQQ RGKRMSAIKE PIGIVAAITP WNFPLAMIAR KIAPALAAGC
TVVAKPAEDT PLTALALAQL AQEAGLPPGV LNMIAASRER GVAAVADWLQ DGRVRKITFT
GSTPVGKHLA RESAGTLKKL SLELGGNAPF IVFDDADLDA AIAGLLSAKF RNGGQTCVCP
NRVYVQAGVY DRFAAMLAAR VSALKVAPAT DPDAQIGPMI NARAVDKIER HVQDAVAHGA
RVLAGGKRLP EVGAHFYAPT VLADAHPGMA LCGEETFGPV VPLFRFTDEA EAVQAANDTP
FGLAAYFYSQ DVRRIDRVAH ALEAGIVGIN EGALASEAAP FGGVKESGYG REGSKYGLDD
YLSIKYLCQG GLA
|
|---|
| |