Gene RSp1560 details

Gene Information

• Locus tag: RSp1560
• Symbol: edd
• ID: 1223872
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003296
• Strand: +
• Start bp: 1962417
• End bp: 1964246
• Gene Length: 1830 bp
• Protein Length: 609 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 637241423
• Product: phosphogluconate dehydratase
• Protein accession: NP_523119
• Protein GI: 17549779
• COG category: [E] Amino acid transport and metabolism; [G] Carbohydrate transport and metabolism
• COG ID: [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase
• TIGRFAM ID: [TIGR00110] dihydroxy-acid dehydratase; [TIGR01196] 6-phosphogluconate dehydratase

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 25
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCCCTGC ACCGCGTACT GGGCGACGTC ACCCAGCGCA TCATCGACCG CAGCCGCGGC 
CCCCGCCAGG CCTATCTGGA AACCACCCGC AAGAACGCCG GCCGCAAGGT CGAGCGGTCC 
CTGCTGTCGT GTACCAACCT CGCCCACGGC TTCGCGGCCA TGGAGGGCGA GGCCAAGATC 
CGCCTGAAGG CGCTGGAGCG GCCCAACATC GGCATCGTCT CGGCGTACAA CGACATGCTG 
TCGGCGCACC AGCCGCTGGA GACCTTCCCG GCCTGGATCA AGGAAGCCGC GCTGGCCGCC 
GGCGGCACCG CCCAGTTCGC CGGCGGCGTG CCGGCCATGT GCGATGGCGT GACGCAAGGG 
CAGGACGGCA TGGAGCTGTC GCTGTTCTCG CGCGACACCA TTGCGCTCGC CACCGCCGTG 
GCGCTGTCGC ACCAGATGTT CGACGCGGCG CTGTACCTGG GCGTGTGCGA CAAGATCGTG 
CCGGGGCTGG TGATCGGCGC GCTGTCGTTC GGCCATCTGC CGGCCGTGTT CGTGCCCGGC 
GGCCCGATGA CCACCGGCAT GAGCAACGAC GAGAAAGCGC GCACGCGCCA GCGCTACGCC 
GAAGGCAAGC TCACGCGCGC CGACCTGCTG GAGGCCGAGT CCAAGTCGTA CCACGGCGCC 
GGCACCTGCA CCTTCTACGG CACCGCCAAC TCCAACCAGA TGCTGATGGA GATCATGGGC 
CTGCACCTGC CGGGCACCGC CTTCATCAAC CCGAACACAC CGCTGCGCGA GGCGCTGACG 
CGCGAATCGG CGCGGCAGGT GCTCAAGCTC GTCTACGGCG GCCAGCAGTA CACGCCGATC 
GCCGACGTGC TCGACGAGCG CGCCTTCGTC AACGGCGTCG TCGGCCTGCT GGCCACCGGC 
GGCTCGACCA ACCACACGCT GCACCTGATC GCGATGGCGC GTGCCGCCGG CATCCTGCTG 
ACGTGGGATG ACTTCGACGA CCTGTCGTCG GTGATTCCGC TGCTGGCGCG CGTGTATCCG 
AACGGCAAGG CGGACGTGAA CGAATTCCAG GCGGCGGGCG GCCTGTCGAT CGTCATCCGC 
GAGCTGCTCG ATGCCGGACT GCTGCACGAC GACGTGACGA CCGTCATGGG CCGGGGCCTG 
CGCCGGCATG CGCAGGAGCC GTTCCTGGAG AATGGCACGC TGGTCTGGCG CGAGGGCGCG 
GCGGCTTCGC TGGACACCAA CATCGTGCGC GGCATGGCCG AGCCGTTCTC GCCGGACGGC 
GGCCTGCGCG TGCTGGACGG CAACCTGGGG CGCTCGGTCA TCAAGGTCTC GGCCGTGAAG 
CCCGAGCACC GCTTCGTGGA AGCGCCGGCC CGCGTCTTCC ACGCGCAGGA CGATCTGATC 
CATGCCTTCA AGGCCGGCGA GCTGGAGCGC GACTTCGTCG CCGTGCTGCC CTACCAGGGC 
CCGGCGGCCA ACGGCATGCC CGAGCTGCAC AAGCTCACGC CGACGCTGTC GGTGCTGCAG 
GAACGCGGCT TCAAGGTGGC GCTGGTGACC GACGGCCGCA TGTCGGGCGC GTCGGGCAAG 
GTGCCGGCGG CGATCCACAT CACGCCGGAG GCGCTCACCG GCGGACCGCT GGCGCGCGTG 
CGCGACGGCG ACATCGTGGT GCTGGACGCG GAGGCCGGCA CGCTGTCGGT GCGCGTGCCG 
GAGGCGGAAT GGAACGCCCG CGAGACCCGC GCGCCCGATC TGGCGCACTA TCACGCGGGC 
GTCGGCCGGG ATCTGTTCTC CGGTTTCCGC CGCAATGTGT CCGCGGCGGA GGAAGGCGCC 
TGCACGCTGT TCGTGTCGGC CGGCGCCTGA 

 

Protein sequence

MALHRVLGDV TQRIIDRSRG PRQAYLETTR KNAGRKVERS LLSCTNLAHG FAAMEGEAKI 
RLKALERPNI GIVSAYNDML SAHQPLETFP AWIKEAALAA GGTAQFAGGV PAMCDGVTQG 
QDGMELSLFS RDTIALATAV ALSHQMFDAA LYLGVCDKIV PGLVIGALSF GHLPAVFVPG 
GPMTTGMSND EKARTRQRYA EGKLTRADLL EAESKSYHGA GTCTFYGTAN SNQMLMEIMG 
LHLPGTAFIN PNTPLREALT RESARQVLKL VYGGQQYTPI ADVLDERAFV NGVVGLLATG 
GSTNHTLHLI AMARAAGILL TWDDFDDLSS VIPLLARVYP NGKADVNEFQ AAGGLSIVIR 
ELLDAGLLHD DVTTVMGRGL RRHAQEPFLE NGTLVWREGA AASLDTNIVR GMAEPFSPDG 
GLRVLDGNLG RSVIKVSAVK PEHRFVEAPA RVFHAQDDLI HAFKAGELER DFVAVLPYQG 
PAANGMPELH KLTPTLSVLQ ERGFKVALVT DGRMSGASGK VPAAIHITPE ALTGGPLARV 
RDGDIVVLDA EAGTLSVRVP EAEWNARETR APDLAHYHAG VGRDLFSGFR RNVSAAEEGA 
CTLFVSAGA