| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp1556 |
|---|
| Symbol | hexR |
|---|
| ID | 1223868 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | + |
|---|
| Start bp | 1957994 |
|---|
| End bp | 1958827 |
|---|
| Gene Length | 834 bp |
|---|
| Protein Length | 277 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637241419 |
|---|
| Product | putative transcription regulation repressor HEXR transcription regulator protein |
|---|
| Protein accession | NP_523115 |
|---|
| Protein GI | 17549775 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1737] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.889642 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCCCGCCT CGCCCACCCC GCCCGCTTCC CCCGAGGCAC CCGCCACCGA CCTGCGCGAA
CGCATCCGCG CCGCCCGTCC GACGCTGTCG CCGGCCGAAC GGCAGGTCGC AGACTGGGTG
CTGCAGCAGC CCGGCACGGT GCTGAGCCTG CCGGTAGCGG CCATCGCCCG CGAGGCCGGC
GTCAGCCAGC CGACCGTGAT CCGCTTCTGC CGCTCGATGG GCTGCCATGG CCTGTCCGAT
TTCAAGCTGC GGCTGGCGCA GGGCAACGGT CCGCGCGGTG CGGCCCCGGC CCGGGCGACG
CATCCGGCGG GGCACCGCAT CCTGCAGGAC ACCATCGACG CCCTCGCCTT GCTGCGCGAC
CAGCTGGACG CACGCGCGCT GGACGCCGCC GTGGCGCTGC TGGAGGCGGC CCGGCGCATC
GACCTGTACG GCTTCGGCAG TTCCGGCGTG GTGGCGCGCG ATGCGCAGAC CAAGTTCTTC
CGCTACGGCA TCGCCGCCGA TGCGTACAGC GATCCGTACC TGATGTCGAT GTCGCTGAAC
GTGCTGCAGG CGGGGGATGT GGTGATCGCC ATTTCCAAGT CCGGCGATCT GCCCGAGCTG
CAGACGGCGG TGGAACGGGT GCGCGAGCTC GGCGTGCGCG TGGTGGCGAT CACGGCGCCG
GGCAGCCGCC TGGCCGCGCT GGCCGACGTG ACGCTGCCCG CCGGCGTGGA GGCCGACGTG
GCCGACCGCT CCATGGTGGC ACGCCTGCTG CACCTCACCC TGCTGGATGC GCTGGTGCTG
GAAACGGCGC TGCGCAAGGG CAGCGCGGTC GGCTGGACGG ATGCGCCGGA ATAG
|
|---|
| Protein sequence | MPASPTPPAS PEAPATDLRE RIRAARPTLS PAERQVADWV LQQPGTVLSL PVAAIAREAG
VSQPTVIRFC RSMGCHGLSD FKLRLAQGNG PRGAAPARAT HPAGHRILQD TIDALALLRD
QLDARALDAA VALLEAARRI DLYGFGSSGV VARDAQTKFF RYGIAADAYS DPYLMSMSLN
VLQAGDVVIA ISKSGDLPEL QTAVERVREL GVRVVAITAP GSRLAALADV TLPAGVEADV
ADRSMVARLL HLTLLDALVL ETALRKGSAV GWTDAPE
|
|---|
| |