| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp1337 |
|---|
| Symbol | speE1 |
|---|
| ID | 1223649 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | + |
|---|
| Start bp | 1687543 |
|---|
| End bp | 1689075 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637241200 |
|---|
| Product | spermidine synthase |
|---|
| Protein accession | NP_522896 |
|---|
| Protein GI | 17549556 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACCGCG GCAACGCCCT CCTGGTGCTG GCGGTCTTCG TGGTCGCCTC GTGCGGGCTG
GCCTACGAGC TGATCGCCGG GGCACTGGCG TCGTACCTGC TGGGCGACTC CATCCTGCAG
TTCTCGTCGA TCATCGGCGC CTACCTGTTC GCGATGGGGA TCGGCTCGTG GGTCTCGCGC
TACGTGGCGG ACGACGCGCT GCTGGCGCGC TTTGTCGACC TGGAGCTGCT GGTCGGCCTG
TTCGGCGGCG TGTCGGCGGC GGCGCTGTTC CTGCTGTTCG CGCTGGAGTC GGCGCCGTTC
CGGCTGGTGC TGTACGCGCT GGTGACGGTG ATCGGCGTGC TGGTCGGCAT GGAGATCCCG
CTGGTGATGC GGATGCTGCA TCGCCGCCAG GCCAAGTTCT CCGACCTGGT CAGCCGCGTG
CTGACCTTCG ACTACCTGGG CGCGCTGGCC GTCTCGCTGC TGTTTCCGCT GGTGCTGGCG
CCGCGCCTGG GGCTGGTGCG CACCGGCTTC CTGTTCGGCC TGTGCAACAC GGCAATCGCG
GTCTGGACGC TGTGGCATTT CCGCGCCGAG CTGGGGCTGT CGGCCCGCCT GCGCGGCGCG
ATGGCGTGGC GCGCCGGGAT GGTCGGCGCG GCGCTGCTGG CCGGCTTCGC CGCGTCGGAC
CGGCTGACGC ACTGGTCGGA GCGGGCGCTG TTCGGCGATG AGATCATCCA CGCCATCTCG
TCGCCCTACC AGCGCCTGGT GGTGACGCGC TGGAAAGACG ACCTGCGCCT CTACATCAAC
GGCAACCTGC AGTTCTCCTC GCGCGACGAG TACCGCTACC ACGAGGCGCT GGTGCTGCCG
GCGCTCGAAT CCGTGCGCGG CGCGCGGCGG GTGCTGGTGC TGGGCGGCGG CGACGGCCTG
GCGCTGCGGC AGATCCTGAA GTATCCGCAA GTCGAGCACG TCACGCTGGT CGACCTGGAC
CCGCGCATGA CCAGCCTGTT CTCGCACGCG GAGGCGCTGG TCGCGCTCAA CCAGCATGCC
TTCAGCGACC CGCGCGTCAC CGTGGTCAAC GCCGATGCGG GGCAGTGGCT GCAGACCGCG
GCCGACATGT TCGACGTGGC GATCGTGGAT TTCCCCGATC CGTCCAACTT CAGCATCGGC
AAGCTGTATT CGGTACCGTT CTACCGGCTG CTGTCGCGCC ACGTGGCGGA CACGGGGCTG
GTGGTGATCC AGGCCACCTC GCCATACTTT GCGCCACGCT CATACTGGTG CGTGGACGCG
ACGCTCAAGG AGGCCGGCTA CCGCACCTGG CCCTACCACG CGCTAGTGCC GTCGTTCGGC
GAATGGGGCT TCATCCTGGC GGCGCCTGGC CGCGCCGACT TCCGCCCGCC GACAACCTAC
CGCGTGCCCA CCCGCTTCCT CGATGCCGAC ACCACGCACC AGATGTTCAG CTTCGCGCCC
GACATGCCGC GTCCGCAGGT CGAGCCCAAC CGGCTGAACA ACCAGTCGCT GGTGCGGTAT
TTCGAAGAAG ACTGGCACGG CGTGCTGCGC TGA
|
|---|
| Protein sequence | MNRGNALLVL AVFVVASCGL AYELIAGALA SYLLGDSILQ FSSIIGAYLF AMGIGSWVSR
YVADDALLAR FVDLELLVGL FGGVSAAALF LLFALESAPF RLVLYALVTV IGVLVGMEIP
LVMRMLHRRQ AKFSDLVSRV LTFDYLGALA VSLLFPLVLA PRLGLVRTGF LFGLCNTAIA
VWTLWHFRAE LGLSARLRGA MAWRAGMVGA ALLAGFAASD RLTHWSERAL FGDEIIHAIS
SPYQRLVVTR WKDDLRLYIN GNLQFSSRDE YRYHEALVLP ALESVRGARR VLVLGGGDGL
ALRQILKYPQ VEHVTLVDLD PRMTSLFSHA EALVALNQHA FSDPRVTVVN ADAGQWLQTA
ADMFDVAIVD FPDPSNFSIG KLYSVPFYRL LSRHVADTGL VVIQATSPYF APRSYWCVDA
TLKEAGYRTW PYHALVPSFG EWGFILAAPG RADFRPPTTY RVPTRFLDAD TTHQMFSFAP
DMPRPQVEPN RLNNQSLVRY FEEDWHGVLR
|
|---|
| |