| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp1306 |
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| Symbol | speE2 |
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| ID | 1223618 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | + |
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| Start bp | 1657308 |
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| End bp | 1658885 |
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| Gene Length | 1578 bp |
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| Protein Length | 525 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637241169 |
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| Product | spermidine synthase |
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| Protein accession | NP_522865 |
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| Protein GI | 17549525 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGACGC CTCCACCCGA CGCCCTCGAC GCCTCCCCGC AGCCAGTGAA CCGCGGCAAC
GCCCTCCTGG TGCTGGCGGT CTTCGTGGTC GCCTCGTGCG GGCTGGCCTA CGAGCTGATC
GCCGGGGCAC TGGCGTCGTA CCTGCTGGGC GACTCCATCC TGCAGTTCTC GTCGATCATC
GGCGCCTACC TGTTCGCGAT GGGGATCGGC TCGTGGGTCT CGCGCTACGT GGCGGACGAC
GCGCTGCTGG CGCGCTTTGT CGACCTGGAG CTGCTGGTCG GCCTGTTCGG CGGCGTGTCG
GCGGCGGCGC TGTTCCTGCT GTTCGCGCTG GAGTCGGCGC CGTTCCGGCT GGTGCTGTAC
GCGCTGGTGA CGGTGATCGG CGTGCTGGTC GGCATGGAGA TCCCGCTGGT GATGCGGATG
CTGCATCGCC GCCAGGCCAA GTTCTCCGAC CTGGTCAGCC GCGTGCTGAC CTTCGACTAC
CTGGGCGCGC TGGCCGTCTC GCTGCTGTTT CCGCTGGTGC TGGCGCCGCG CCTGGGGCTG
GTGCGCACCG GCTTCCTGTT CGGCCTGTGC AACACGGCAA TCGCGGTCTG GACGCTGTGG
CATTTCCGCG CCGAGCTGGG GCTGTCGGCC CGCCTGCGCG GCGCGATGGC GTGGCGCGCC
GGGATGGTCG GCGCGGCGCT GCTGGCCGGC TTCGCCGCGT CGGACCGGCT GACGCACTGG
TCGGAGCGGG CGCTGTTCGG CGATGAGATC ATCCACGCCA TCTCGTCGCC CTACCAGCGC
CTGGTGGTGA CGCGCTGGAA AGACGACCTG CGCCTCTACA TCAACGGCAA CCTGCAGTTC
TCCTCGCGCG ACGAGTACCG CTACCACGAG GCGCTGGTGC TGCCGGCGCT CGAATCCGTG
CGCGGCGCGC GGCGGGTGCT GGTGCTGGGC GGCGGCGACG GCCTGGCGCT GCGGCAGATC
CTGAAGTATC CGCAAGTCGA GCACGTCACG CTGGTCGACC TGGACCCGCG CATGACCAGC
CTGTTCTCGC ACGCGGAGGC GCTGGTCGCG CTCAACCAGC ATGCCTTCAG CGACCCGCGC
GTCACCGTGG TCAACGCCGA TGCGGGGCAG TGGCTGCAGA CCGCGGCCGA CATGTTCGAC
GTGGCGATCG TGGATTTCCC CGATCCGTCC AACTTCAGCA TCGGCAAGCT GTATTCGGTA
CCGTTCTACC GGCTGCTGTC GCGCCACGTG GCGGACACGG GGCTGGTGGT GATCCAGGCC
ACCTCGCCAT ACTTTGCGCC ACGCTCATAC TGGTGCGTGG ACGCGACGCT CAAGGAGGCC
GGCTACCGCA CCTGGCCCTA CCACGCGCTA GTGCCGTCGT TCGGCGAATG GGGCTTCATC
CTGGCGGCGC CTGGCCGCGC CGACTTCCGC CCGCCGACAA CCTACCGCGT GCCCACCCGC
TTCCTCGATG CCGACACCAC GCACCAGATG TTCAGCTTCG CGCCCGACAT GCCGCGTCCG
CAGGTCGAGC CCAACCGGCT GAACAACCAG TCGCTGGTGC GGTATTTCGA AGAAGACTGG
CACGGCGTGC TGCGCTGA
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| Protein sequence | MPTPPPDALD ASPQPVNRGN ALLVLAVFVV ASCGLAYELI AGALASYLLG DSILQFSSII
GAYLFAMGIG SWVSRYVADD ALLARFVDLE LLVGLFGGVS AAALFLLFAL ESAPFRLVLY
ALVTVIGVLV GMEIPLVMRM LHRRQAKFSD LVSRVLTFDY LGALAVSLLF PLVLAPRLGL
VRTGFLFGLC NTAIAVWTLW HFRAELGLSA RLRGAMAWRA GMVGAALLAG FAASDRLTHW
SERALFGDEI IHAISSPYQR LVVTRWKDDL RLYINGNLQF SSRDEYRYHE ALVLPALESV
RGARRVLVLG GGDGLALRQI LKYPQVEHVT LVDLDPRMTS LFSHAEALVA LNQHAFSDPR
VTVVNADAGQ WLQTAADMFD VAIVDFPDPS NFSIGKLYSV PFYRLLSRHV ADTGLVVIQA
TSPYFAPRSY WCVDATLKEA GYRTWPYHAL VPSFGEWGFI LAAPGRADFR PPTTYRVPTR
FLDADTTHQM FSFAPDMPRP QVEPNRLNNQ SLVRYFEEDW HGVLR
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