| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp1187 |
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| Symbol | ndeD |
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| ID | 1223499 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | + |
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| Start bp | 1508867 |
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| End bp | 1510351 |
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| Gene Length | 1485 bp |
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| Protein Length | 494 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 637241052 |
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| Product | N-acyl-D-glutamate deacylase protein |
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| Protein accession | NP_522748 |
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| Protein GI | 17549408 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3653] N-acyl-D-aspartate/D-glutamate deacylase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.826213 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.915695 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCAGT ACGACAGCGT CATCCGCAGG GTCCGCATCG TCGACGGCAG CGGCCACGAG
CCCGAGTCCA CGCTGTTCGA CGTCGCCATC GCCGATGGCC GCATCGCCGC CATCGCCACC
TCCGACTCCA CCGCCTGGCT GGGCGACGAG GAGGTCGACG GCGCGGGCCG CGTGCTGGCG
CCCGGCTTCA TCGACGTCCA CACCCACGAC GACACCAACG TGATCCGCAC GCCGGACATG
CTGCCGAAGG TGTCGCAGGG CATCACCACC GTCATCGTCG GCAACTGCGG CATCAGCGCG
TCGCCGGCCA CGCTCCGGGG CGAGCCGCCG GACCCGATGA ACCTGCTCGG CCCGGCCGGC
GCGTTCCGCT ATCCGACCTT CGCGTCGTAC GTGGAGGCGG TGGAGCAAGC GCGGCCGGCC
GTCAACGTGG CGGCGCTGGT CGGCCACACG GCGCTGCGCA ACAACCACCT CGACCGGCTC
GACCGCCCCG CCACGGCGCC CGAAGTCGAA GCCATGCGCG CGCAGCTGCG CGAGGCGCTC
GACCACGGCG CGCTGGGCCT GTCCACCGGA CTGGCCTATG CCAACGCCCA TGCCGCCGCC
ACCGAAGAAG TGATGAGCCT GGCCGAGCCG CTGGCCGAGG CCGGCGCGCT GTACACCACG
CACCTGCGCA CCGAGTTCGC CGCCATCCTG GAGGCGATGG ACGAGGCCTA CCGCGTCGGC
CGGCACGCGC GCGTGCCCAT CGTGATCTCG CACCTGAAGT GCGCGGGCGC CGCCAACTGG
GGGCGCGCCG GCGAAGTGCT GGAATCGATC GAGGCCGCGC AGCGCTACCA GCCGGTCGGC
TGCGACTGCT ATCCGTACAC CGCCAGCTCG TCCACGCTGG ACCTGAAGCA GGTGACGGAC
GAATTCGACA TCGTCATCAC CTGGTCGGAC CCGCATCCGG AGATGGCCGG CCAGACCCTG
AAGGCCATCG CCGCCGCCTG GGGCACCGAC CTGCTCGACG CCGCGCGCCG CCTGCAGCCG
GCCGGCGCGG TCTACCACAA CATGGCGGCC GAGGACCTCG ACCGCATCAT TGCGCACCCC
GCCACCGTGA TCGGCTCCGA CGGCCTGCCC AACGATCCGC AGCCGCATCC GCGCCTGTGG
GGCGCCTTCC CGCACGTGCT CGCCCACTAC AGCCGCGAAC GCCAGTTGCT GAGCCTGGCG
GCGGCCGTCC GCAAGATGAC CGGACAGTCC GCCGAGCGCT TCGGCCTGGC CGAGCGCGGC
CTCGTGCGCG AAGGCTGGTG GGCCGATCTC GTGCTGTTCG ACCCCGACAC GGTGCGCGAC
CTCGCCACCT TCACCGACCC CAAGCAGCCG GCCGCCGGCA TCGAGGCGGT GTGGGTCAAC
GGCGCGCTGT CGTACCGCGA CGGTGCCGTG CAGCCGCGCC GCGCCGGGCG CTTCCTGCGG
CGCGGGCCGC GCGCGCACGC TCAACCCGCG CCCGAGCTCC ACTGA
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| Protein sequence | MQQYDSVIRR VRIVDGSGHE PESTLFDVAI ADGRIAAIAT SDSTAWLGDE EVDGAGRVLA
PGFIDVHTHD DTNVIRTPDM LPKVSQGITT VIVGNCGISA SPATLRGEPP DPMNLLGPAG
AFRYPTFASY VEAVEQARPA VNVAALVGHT ALRNNHLDRL DRPATAPEVE AMRAQLREAL
DHGALGLSTG LAYANAHAAA TEEVMSLAEP LAEAGALYTT HLRTEFAAIL EAMDEAYRVG
RHARVPIVIS HLKCAGAANW GRAGEVLESI EAAQRYQPVG CDCYPYTASS STLDLKQVTD
EFDIVITWSD PHPEMAGQTL KAIAAAWGTD LLDAARRLQP AGAVYHNMAA EDLDRIIAHP
ATVIGSDGLP NDPQPHPRLW GAFPHVLAHY SRERQLLSLA AAVRKMTGQS AERFGLAERG
LVREGWWADL VLFDPDTVRD LATFTDPKQP AAGIEAVWVN GALSYRDGAV QPRRAGRFLR
RGPRAHAQPA PELH
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