| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp1113 |
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| Symbol | YS02621 |
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| ID | 1223425 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | + |
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| Start bp | 1408202 |
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| End bp | 1411411 |
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| Gene Length | 3210 bp |
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| Protein Length | 1069 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637240978 |
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| Product | transmembrane multidrug-efflux system lipoprotein transmembrane |
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| Protein accession | NP_522674 |
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| Protein GI | 17549334 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.674026 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.708175 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTTCT CCAAATTCTT CGTGGACCGC CCCATCTTCG CCGGGGTGCT TTCCACGCTG
ATCCTGCTGA TCGGGATCAT CTCGATCTGG CGATTGCCGA TCTCGGAGTA CCCCGAGGTC
GTGCCGCCTT CGGTGGTGGT GCGCGCGCAG TTTCCGGGCG CCAACCCCAA GGTGATCGCC
GAAACCGTCG CCTCGCCGCT CGAAGAACAG ATCAACGGCG TCGAGAACAT GCTCTACATG
CAGTCGCAGG CCAACAGCGA CGGCAACCTG ACCGTGACGG TGACCTTCAA GCTGGGCACC
GACCCGGACA AGGCCCAGCA ACTGGTGCAG AACCGCGTCT CGCAAGCCAT GCCGCGCCTG
CCCGACGTGG TGCAGCGCCT GGGCGTGACC ACCATCAAGA GCAGCCCCGA CCTGACGATG
GTGGTCCACC TGCTGTCGCC CAACGACCGC TACGACATGA CGTACCTGCG CAACTACGCG
GTGCTCAACG TCAAGGACCG CCTGGCACGC ATCAACGGCG TGGGCCAGGT GCAACTGTTC
GGCTCGGGCG ACTACTCGAT GCGCGTGTGG CTCGACCCGA ACAAGGTGGC CGAGCGCGGC
CTGACCGCCA ATGAAGTGGT GCGCGCCATC CGCGACCAGA ACGTGCAGGT GGCGGCCGGC
GTGATCGGCG GCTCGCCGTC GCTGCCGGGC ACGGACCTGC AGTTGTCCGT CAATGCGCAG
GGGCGCCTGA AGACCGAGCA GGAATTCGGC GACATCATCC TCAAGAGCTC GCCCAACGGC
GCGGTGACCA CCCTGCGCGA CGTGGCCCGC ATCGAGCTGG CCGCGTCGGA ATACGGCCTG
CGCTCGCTGC TGGACAACAA GCAGGCGGTG GCCATTCCGA TCTTCCAGGC GCCGGGCTCC
AACGCGCTGC AGATTTCGGA CGACGTGCGC AAGACGATGG CCGAGCTGAA GGAAGACTTT
CCCGAAGGCG TGGACTACCG CATCGTCTAT GACCCGACGC AGTTCGTCCG CTCGAGCATC
GAGGCGGTCA CGCACACGCT GCTCGAAGCG GTGGCGCTGG TGGTGCTGGT GGTGATCCTG
TTCCTGCAGA CTTGGCGCGC GTCGGTCATT CCGCTGCTGG CGGTGCCGGT GTCCATCATC
GGCACGTTCG GGCTGATGCT GATGTTCGGC TTCTCGATCA ACGCGCTGTC GCTGTTCGGG
CTGGTGCTGG CGATCGGGAT CGTGGTGGAT GACGCCATCG TGGTGGTGGA GAACGTCGAG
CGCAACATCG CCGACGGGCT GTCGCCGCGC GAGGCCACCT ACAAGGCCAT GCGCGAGGTG
AGCGGCCCCA TCATCGCCAT CGCGCTGACG CTGATCGCCG TGTTCGTGCC GCTGGCCTTC
ATGACGGGCC TGACCGGCCA GTTCTACAAG CAGTTCGCGC TGACGATCTC GATCTCGACG
GTCATCTCCG CGTTCAACTC GCTCACGCTG TCGCCGGCGC TGGCCGCGCT GCTGCTCAAG
AGCCATGACG CGCCGAAGGA CCTGCTGGCG CGTGTGATGG AACGCGGCCT GGGTTGGATC
TTCCGCCCGT TCAACCGCGT GTTCGGTGCC GCGTCGGAAT CGTATGGCCG CAGCACATCG
CGCGTGATCG GCCGCAAGGC CGTCATGCTG GGCATCTATC TGGCGCTGAT CGGCCTGACC
GCGCTGCTGT TCAACCGCGT GCCGGGCGGC TTCGTGCCGA TGCAGGACAA GCAGTACCTG
GTGAGCTTCG CGCAGCTGCC CGACGGCGCC TCGCTGGACC GCACCGAGGA CGTGATCCGC
CGCATGTCGG ACATCGCCCT GAAGCACCCC GGCGTGGAAA GCGCCGTGGC CTTCCCGGGC
CTGTCGATCA ACGGCTTCAC CAACAGCCCG AGCGCCGGCA TCGTGTTCGT CACGCTCAAG
CCGTTCGACC AGCGCAAGAC GCCCAACCTG TCGGGCGGCG CCATCGCCGG CCAGCTGAAC
CAGCAGTACG GCGCCATCAA GGATGCGTTC ATCGCCGTGT TCCCGCCGCC GCCGGTGCAG
GGCCTCGGCA CGGTGGGCGG CTTCAAGATG CAGCTGGAAG ACCGCGGCTC GGTCGGCTAC
GAGCAGCTCT TCGCCGCCTC GCAGGCCTTC ATGCAGAAGG CGCGCCAGAC GCCGGAGCTG
GGCCCGTCGT TCTCGAGCTA CCAGATCAAC GTGCCGCAGC TCAACGCCGA CCTGGACCGC
GTCAAGGCCA AGCAGCTGGG CGTGCCGGTC ACGGATGTGT TCGACACCAT GCAGATCTAC
CTGGGCTCGC TGTACGTGAA CGACTTCAAC CGGTTCGGCC GCACCTACCA GGTGAAGGTC
CAGGCCGATG CGCCGTTCCG CGCCCACGCC GAAGACATCC TGCAACTCAA GACCCGCAAC
ACCGATGGCG ACATGGTGCC CCTGTCCTCC CTGCTGCGCG TGTCGCAAGG CTTCGGGCCC
GACATGGTGG TGCGCTACAA CGGCTACACC GCCGCCGACA TCAACGGCGG CCCGGCGCCG
GGCTACTCGT CGGGCCAGGC CCAGGCCGCG GCCGAGCGCA TCGCGCGCGA GGTGCTGCCC
AAGGGCGTGC GCTTCGAGTG GACGGACCTG ACGTATCAGC AGATCCTGGC CGGCAACTCC
GCCGTGTGGA TCTTCCCGCT GTGCGTGCTG CTGGTGTTCC TGGTGCTGGC CGCGCAGTAC
GAGAGCCTGA CGCTGCCGCT GGCGGTGATC CTGATCGTGC CGATGAGCCT GTTCGCCGCC
ATGCTGGGCG TGTGGATCTC GCACGGCGAC AACAACATCT TCACGCAGAT CGGCCTGGTG
GTGCTGGTGG GGCTGGCGTG CAAGAACGCG ATCCTGATCG TCGAATTTGC GCGGGAGCTG
GAGCTGCAGG GGCGCTCGAT CGTGGAAGCC GCCATCGAGG CCTGCCGCCT GCGTCTGCGC
CCGATCCTGA TGACGTCGAT CGCCTTCATC ATGGGCGTGG TGCCCCTGGT GATGTCGACC
GGCGCCGGCG CGGAGATGCG TCATGCCATG GGCGTGGCCG TGTTCGCGGG GATGCTGGGC
GTGACGCTGT TCGGCCTGTT CCTCACGCCG GTGTTCTACG TGGTGCTGCG CACGCTGGCC
TCGCGCCGCC GCCAGCGCTC GGAAGACGCC CCCGACCTGG ATCCGGACGC CGGCGGCACG
GCCCTGCCGC TGCCCTCCGG CCAACACTAA
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| Protein sequence | MNFSKFFVDR PIFAGVLSTL ILLIGIISIW RLPISEYPEV VPPSVVVRAQ FPGANPKVIA
ETVASPLEEQ INGVENMLYM QSQANSDGNL TVTVTFKLGT DPDKAQQLVQ NRVSQAMPRL
PDVVQRLGVT TIKSSPDLTM VVHLLSPNDR YDMTYLRNYA VLNVKDRLAR INGVGQVQLF
GSGDYSMRVW LDPNKVAERG LTANEVVRAI RDQNVQVAAG VIGGSPSLPG TDLQLSVNAQ
GRLKTEQEFG DIILKSSPNG AVTTLRDVAR IELAASEYGL RSLLDNKQAV AIPIFQAPGS
NALQISDDVR KTMAELKEDF PEGVDYRIVY DPTQFVRSSI EAVTHTLLEA VALVVLVVIL
FLQTWRASVI PLLAVPVSII GTFGLMLMFG FSINALSLFG LVLAIGIVVD DAIVVVENVE
RNIADGLSPR EATYKAMREV SGPIIAIALT LIAVFVPLAF MTGLTGQFYK QFALTISIST
VISAFNSLTL SPALAALLLK SHDAPKDLLA RVMERGLGWI FRPFNRVFGA ASESYGRSTS
RVIGRKAVML GIYLALIGLT ALLFNRVPGG FVPMQDKQYL VSFAQLPDGA SLDRTEDVIR
RMSDIALKHP GVESAVAFPG LSINGFTNSP SAGIVFVTLK PFDQRKTPNL SGGAIAGQLN
QQYGAIKDAF IAVFPPPPVQ GLGTVGGFKM QLEDRGSVGY EQLFAASQAF MQKARQTPEL
GPSFSSYQIN VPQLNADLDR VKAKQLGVPV TDVFDTMQIY LGSLYVNDFN RFGRTYQVKV
QADAPFRAHA EDILQLKTRN TDGDMVPLSS LLRVSQGFGP DMVVRYNGYT AADINGGPAP
GYSSGQAQAA AERIAREVLP KGVRFEWTDL TYQQILAGNS AVWIFPLCVL LVFLVLAAQY
ESLTLPLAVI LIVPMSLFAA MLGVWISHGD NNIFTQIGLV VLVGLACKNA ILIVEFAREL
ELQGRSIVEA AIEACRLRLR PILMTSIAFI MGVVPLVMST GAGAEMRHAM GVAVFAGMLG
VTLFGLFLTP VFYVVLRTLA SRRRQRSEDA PDLDPDAGGT ALPLPSGQH
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