| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp0880 |
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| Symbol | pglA |
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| ID | 1223187 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | - |
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| Start bp | 1111749 |
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| End bp | 1113344 |
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| Gene Length | 1596 bp |
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| Protein Length | 531 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637240740 |
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| Product | polygalacturonase precursor (pectinase) signal peptide protein |
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| Protein accession | NP_522441 |
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| Protein GI | 17549101 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5434] Endopolygalacturonase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.609321 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0402395 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCTTGT CTCACCGCTA CACACTCATC GCGCTTGCCG CCGCGATCCT GTCCTCCGGC
GCGCATGCCG CCGGCGCCTC CGTCACCGCC TCCTGGGGCA ACGTGGCCGA ACCCAGCCTG
CCGGCCGATT CGGCTGTCTG CAAGACGCTG GCGGCCACGA TCACGCCGGT CAGCGGCTCC
ATCGATACGG TGGACGGCAA CCCCAGCAAC TCCCAGCCCG ACGCGAGCCG CATCCAGACC
GCCATCGACA ACTGCCCGGC CGGCCAGGCC GTCCGGCTGG TGAAGGGCAG CGCCGGCGAG
TCCGGCTTCC TGAGCGGCTC GCTCAAGCTC AAGTCGGGCG TGACGCTGTG GATCGATACC
GGCGTGACCC TGTTCGCCTC GCGCAACCCG GCCGACTTTG ACAACGGCGT GGGCACCTGC
GGCACCGCCA CCACCAGCAA CACCAAGTCG TGCAACGCGC TGATCGTGGC GCGCGACACG
GTGGGCAGCG GCATCGTCGG CGACGGCATC ATCGATGGGC GCGGCGGCAG CCTGGTCACC
AGCGGCCCGA ACGCGAACCG GCTCACCTGG TGGGATATCG CCTACCTGAA CAAGACCAAG
GGGCTGAACC AGCAGAACCC GCGCCTGGTC CAGCTGTACA ACGGCAGCGC GTTCACGCTG
TACCGCGTGA CGGTGCAGAA CTCGCCCAAC TTCCACATCG TCACCACCGG CACGGCGGGC
GTGACGGCAT GGGGCATCAA GATCGTGACG CCAAGCCTGG CCTACACCGT GCCGGGCTAC
AAGTGCGCGG CCGGCACCAC GCCCGACAAG GTCACGCCCG CGACCTGCTT CACGCCCGAG
ACGGTCAAGA ACACCGACGG TTTCGATCCG GGCCAGTCGA CCAATGTGGT GCTCGCCAAC
TCGTACATCA GCACCGGCGA TGACCACGTC GCCATCAAGG CCAGCGGCGG CGCGACGCGC
AACCTGCTCT TCGCACACAA CCACTTCTAC TATGGGCATG GCCTGTCGAT CGGCAGCGAG
ACCGATGGGG GTGTGAGCAA CATGCAGGTG ACCGACCTGG CGATGGACGG CAACGACAGC
TCGGGTGGCA ACGGCCTGCG CATCAAGTCC GACATTTCGC GCGGCGGCAA GGTCAACAAC
ATCGTCTACA ACGGCATCTG CATGCGCAAC GTCAAGGAGC CGCTGGTGTT CGACCCGTTC
TACAGCACCG CGAAGGGCTC CCTCTACCCG AACTTCACCA ACATCGTCGT GAAGAACTTC
CATGACCTGG GCAGCGCCAA GGGCATCGCG CGCACGATGA CGTTCCTGGG CTATGAAGCG
AAAAAGCGGA CCAACCCGCT GACGCTCACG CTCGACAACG TGGTGTTCGA CGGCACGCAG
CCGGCGTTCG ATGTCGCGCA CAACGGTGGC CCCGCGTCGC CCAATGGCAC GCACTTCACG
TTCGGCGGCA ACGGTCCGGT GAGCTTTGCG AATGCGATCG TCACGTCGTC GACCACCGAT
GTGACGGTGA CCGGCACGCC GGGCACGGCG GCGGCGGTGG ATTGCAGCAA TGCCTTCGTG
CCGCTGAAGT CCGTGGCACC GACCTCGCCG ATCTGA
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| Protein sequence | MILSHRYTLI ALAAAILSSG AHAAGASVTA SWGNVAEPSL PADSAVCKTL AATITPVSGS
IDTVDGNPSN SQPDASRIQT AIDNCPAGQA VRLVKGSAGE SGFLSGSLKL KSGVTLWIDT
GVTLFASRNP ADFDNGVGTC GTATTSNTKS CNALIVARDT VGSGIVGDGI IDGRGGSLVT
SGPNANRLTW WDIAYLNKTK GLNQQNPRLV QLYNGSAFTL YRVTVQNSPN FHIVTTGTAG
VTAWGIKIVT PSLAYTVPGY KCAAGTTPDK VTPATCFTPE TVKNTDGFDP GQSTNVVLAN
SYISTGDDHV AIKASGGATR NLLFAHNHFY YGHGLSIGSE TDGGVSNMQV TDLAMDGNDS
SGGNGLRIKS DISRGGKVNN IVYNGICMRN VKEPLVFDPF YSTAKGSLYP NFTNIVVKNF
HDLGSAKGIA RTMTFLGYEA KKRTNPLTLT LDNVVFDGTQ PAFDVAHNGG PASPNGTHFT
FGGNGPVSFA NAIVTSSTTD VTVTGTPGTA AAVDCSNAFV PLKSVAPTSP I
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