| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp0872 |
|---|
| Symbol | hrcT |
|---|
| ID | 1223179 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | + |
|---|
| Start bp | 1098126 |
|---|
| End bp | 1098974 |
|---|
| Gene Length | 849 bp |
|---|
| Protein Length | 282 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637240732 |
|---|
| Product | Hrp conserved HRCT transmembrane protein |
|---|
| Protein accession | NP_522433 |
|---|
| Protein GI | 17549093 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4791] Type III secretory pathway, component EscT |
|---|
| TIGRFAM ID | [TIGR01401] type III secretion protein SpaR/YscT/HrcT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.224699 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.00958817 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAATCGA TCGATACCGT TGTGCATGCC TGGTTCGATA CCAGCGAAAG CCTGGAGACG
CTGCTCGTGC TGCTGGCACT GAGCTGCGTG CGCATCATGA CGCTTTTCTC CATCCTGCCC
GCCACCAACG ACCAGATGCT GACCGGCATC GCGCGCAACG GCGTGGTTTA TGCGCTGGCG
ATCCTGGTGG CGGCGGGGCA GCCGGTGGGC CTCGCCGCGC ATCTCAGCGC GGGGCAACTG
TTCATGCTGA CCTGCAAGGA GATCTTCCTG GGTGCCTGCC TGGGCTTCGC GGCATCGACG
GTGTTCTGGG TGGCGGAGAC AGCCGGCACC CTCATCGACA ACGTCTCCGG GTTCAATAAC
GTGCAGATGA CGAACCCCTT GCGCGGCGAT CAGAACACCC CGATCGGCAA CACGCTGGTG
AACCTGGCCG TGACGCTGTT CTACGCGGCC GGCGGCATGC TGTTCCTGCT CGGCGTCGTG
TTCGAATCGT TCAAGTGGTG GCCGCTCGGC GCCGCGCTGC CCGATATGAA CGCGGTTGCG
CAGAGCTTCC TGCTGCAGCA GACCGACTCG ATCTTCTCCA CGGCCGTGAA GCTCGCCGCG
CCCGTGATGA TGACGATGCT GCTGATCGAT GCCGGCATCG GCTTGCTGGC GCGCGCGGCG
GACAAACTCG AGCCCACCTC GCTCGGCCAG CCGATCAAGG GCGCGGTGGC GCTGCTGATG
GTGATGGCCT TGGTCACCGC GCTGTCCACC CAGGTCAAGG GTACGCTCAC CTACAGCCAG
TTGAAAGAGC AGGTGAAGCA AGGATTGGTG GGTGACGGCA CGTCGCCAAA AGCGAAAACT
CCACAGTGA
|
|---|
| Protein sequence | MESIDTVVHA WFDTSESLET LLVLLALSCV RIMTLFSILP ATNDQMLTGI ARNGVVYALA
ILVAAGQPVG LAAHLSAGQL FMLTCKEIFL GACLGFAAST VFWVAETAGT LIDNVSGFNN
VQMTNPLRGD QNTPIGNTLV NLAVTLFYAA GGMLFLLGVV FESFKWWPLG AALPDMNAVA
QSFLLQQTDS IFSTAVKLAA PVMMTMLLID AGIGLLARAA DKLEPTSLGQ PIKGAVALLM
VMALVTALST QVKGTLTYSQ LKEQVKQGLV GDGTSPKAKT PQ
|
|---|
| |