Gene RSp0864 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSp0864 
SymbolhrcU 
ID1223171 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003296 
Strand
Start bp1091741 
End bp1092814 
Gene Length1074 bp 
Protein Length357 aa 
Translation table11 
GC content67% 
IMG OID637240724 
Producttype III secretion system protein HrcU 
Protein accessionNP_522425 
Protein GI17549085 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1377] Flagellar biosynthesis pathway, component FlhB 
TIGRFAM ID[TIGR01404] type III secretion protein, YscU/HrpY family 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00479024 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCGGACG AAAAGACCGA ACAGCCCACA GACAAGAAAC TCGAGGATGC GCACCGGGAC 
GGCGAGACCG CCAAGAGCGC AGACCTGACC GCGGCGGCGG TGCTGCTCTC CGGCTGCCTG
CTGCTGGCAC TGACCGCCTC CGTCTTCGGC GAGCGATGGC GGGCCCTGCT CGACCTCGCG
CTGGATGTCG ACAGCAGCCG GCACCCGTTG ATGACGCTCA AGCAGACGAT CAGCCATTTC
GCCCTGCAGC TCGTGCTGAT GACGCTGCCG GTGGGCTTCG TCTTCGCGCT GGTCGCCTGG
ATCGCGACAT GGGCGCAGAC CGGCGTGGTG CTGTCGTTCA AGCCGGTCGA GCTGAAGATG
AGCGCGATCA ACCCGGCCTC GGGCCTCAAG CGCATCTTCT CGGTGCGCTC GATGATCGAC
CTGGTCAAGA TGATCATCAA GGGCGTGGCG GTGGCGGCGG CGGTCTGGAA GCTCATCCTG
ATCCTGATGC CGTCCATCGT CGGCGCCGCC TATCAGTCCG TCATGGACAT CGCCGAGATC
GGCATGACGC TGCTGGTCCG GCTGCTGGCG GCGGGCGGCG GACTGTTCCT GATCCTGGGC
GCCGCCGACT TCGGCATCCA GCGCTGGCTG TTCATCCGCG ACCACCGCAT GAGCAAGGAC
GAAGTCAAGC GCGAGCACAA GAACAGCGAA GGCGACCCGC ACATCAAGGG CGAGCGCAAG
AAGCTCGCGC GCGAGCTGGC CGATGAAGCC AAGCCCAAGC AGAGCGTGGC CGGCGCGCAG
GCCGTGGTCG TCAACCCGAC CCACTACGCC GTGGCCATCC GCTACGCGCC GGAGGAATAC
GGCCTGCCCC GCATCATCGC CAAGGGCGTG GACGACGAGG CGCTGGCGCT GCGCGAGGAA
GCCGCCGCGC TGGGCATCCC CATCGTCGGC AACCCACCGC TGGCGCGCTC ACTGTATCGC
GTCGACCTCT ACGGACCCGT ACCGGAGCCC CTCTTCGAGA CCGTTGCCGA AGTGCTGGCA
TGGGTGGGCG AAATGGGTGC CTCGGGCACC CCGGGCGCCG AGCCCCAACA CTGA
 
Protein sequence
MSDEKTEQPT DKKLEDAHRD GETAKSADLT AAAVLLSGCL LLALTASVFG ERWRALLDLA 
LDVDSSRHPL MTLKQTISHF ALQLVLMTLP VGFVFALVAW IATWAQTGVV LSFKPVELKM
SAINPASGLK RIFSVRSMID LVKMIIKGVA VAAAVWKLIL ILMPSIVGAA YQSVMDIAEI
GMTLLVRLLA AGGGLFLILG AADFGIQRWL FIRDHRMSKD EVKREHKNSE GDPHIKGERK
KLARELADEA KPKQSVAGAQ AVVVNPTHYA VAIRYAPEEY GLPRIIAKGV DDEALALREE
AAALGIPIVG NPPLARSLYR VDLYGPVPEP LFETVAEVLA WVGEMGASGT PGAEPQH