| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp0863 |
|---|
| Symbol | hrcV |
|---|
| ID | 1223170 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | - |
|---|
| Start bp | 1089650 |
|---|
| End bp | 1091722 |
|---|
| Gene Length | 2073 bp |
|---|
| Protein Length | 690 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637240723 |
|---|
| Product | Hrp conserved HRCV transmembrane protein |
|---|
| Protein accession | NP_522424 |
|---|
| Protein GI | 17549084 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4789] Type III secretory pathway, component EscV |
|---|
| TIGRFAM ID | [TIGR01399] type III secretion protein, HrcV family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00860177 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAAA AGAATGCAAT CCAGGATTTC AGCGGCGAAA TCGGTATCGC CGCGCTAGTG
GTGGCGGTGG TGGCGCTGAT GGTGCTGCCG CTGCCGACCA TGCTGATCGA CGCGCTGCTC
GGTCTGAACA TCACGCTCTC GGTCGTGCTG CTGATGGTGA CGATGTACAT TCCGTCGGCG
ACCTCGCTGT CGGCGTTTCC GTCGCTGCTG CTGTTCACGA CGCTGCTGCG GCTGTCGCTG
AACATCGCCT CCACCAAGTC CATTCTGCTG CACGCGGACG CCGGCCACAT CATCGAGAGC
TTCGGCAAGC TGGTGGTGGG CGGCAACCTG GTGGTGGGCC TGGTGGTGTT CCTGATCATC
ACCACGGTGC AGTTCATCGT GATCGCCAAG GGTTCGGAGC GCGTGGCCGA GGTCGGCGCG
CGCTTCACGC TGGACGCCAT GCCCGGCAAG CAGATGAGCA TCGACGCCGA CCTGCGCGCC
GGCCACCTGT CGCCCGAAGA GGCCCGCAAG CGCCGCGCGC TGCTGGCGAT GGAGAGCCAG
CTGCACGGCG GCATGGACGG CGCCATGAAG TTCGTCAAGG GCGACGCCAT CGCCGGCCTG
GTCATCACGC TGGTCAACAT CCTGGCCGGC ATCGTGATCG GCATCACGTA CCACAACATG
ACCGCCGGCG AGGCGGCCAA CCGCTTCGCG GTGCTGTCGA TCGGCGACGC CATGGTCTCG
CAGATCCCGT CGCTGCTGAT CTCGGTGGCG GCCGGCGTGA TGATCACCCG CGTCTCCGAC
GAAGAGCAGG CCCACAAGCA GTCGTCGCTG GGCATGGAGA TCGTGCGGCA GCTGTCCACC
AGCGCGCGCG CCATGTTCAC CGCCAGCGCC CTGCTGATGG GCTTCGCGCT GGTGCCGGGC
TTTCCGTCGT TCCTGTTCGT CGCGCTGGCG ACGCTGATCT TCGTGTTCGG CTACACGCTG
CGCAACCGCG CCAAGGAGGG CGACGGCGAC GAAGGCGACG CCCTGCCCGC GCTGCTGCGC
GAGGGCTCGA AGGGCAAGGC GCCGACCATC GCCGAACAGG CCCCGTCGTT TACCGTGCCG
GTGGGCGTGC GGCTCGGCGC GGAGCTGGCC AAGGGCCTGG ACGTGCCCGC CCTCGATACC
GCCTTCCAGC AGGGCCGCCA CGCGCTGGCC GAAGCGCTCG GCCTGCCCTT CCCCGGCATC
GCGATCTGGA AGGCCGACGC CCTGCAGCCC GACAGCTACG AGGTGCGCGT GCACGATATC
CCGGGCGAGC CGGTCGCGGT GCCGGACGGC CATCTGCTGA TCCCGGATCT GCCGGAGGCG
CTGCGCGCGC AGGCGGTCGA GGCCGCGGGC CTGCCCAATC ATCCGGCGCC GCACTGGATC
GCGCCGGCCC ACGTGGCCCA GGACGCGGCG CTGAGCGCCA CCGGCCAGCG CGTGGAGCGC
GTGATCGCCG ATCACGTCGT GCACGTGCTG CGCCGGAGTG CGCACCTGTT CGTCGGCCTG
CAGGAAACGC AGTGGATGCT CGAGCGCGTC ACCACCGACT ACCCCGGCCT GGTGGCCGAA
GCGCAGAAGG CCGTGCCGGC CCAGCGGATC GCCGACGTGC TGCGGCGCCT GCTGGAAGAG
CAGGTGCCCA TCCGCAACAT GCGCGCCATT CTCGAGAGCC TGGTGGTCTG GGGCCCGAAG
GAGAAGGACA CGCTGATGCT GGTGGAATAC GTGCGCGGCG ACCTGGGACG GCAGATCGCG
CACCAGGCCA CCGGCGGCAC CCGCCAGATG CCGGCCATCC TGCTGGACCT GTCGGTCGAG
CAGACCGTGC GCCAGGCCAT CAAGCCGACG CCGGCGGGCA ACTTCCTGAC GCTCGATCCG
CAGCAGGTGG AGGCCATCAT CATGCGCCTG CGCGGCATCA TGCAGGGCAA CCCCGTCGAG
ACGCCCTCGG CGCTGGCCAT CGTGACCTCG ATGGACATCC GCCGCTATGT CCGGCGCATG
ATCGAGCCGC ACCTGCAGGC GCTGAACGTG TATTCGTTCC AGGAGCTTGG CGGCTACGTC
GACCTGCGCC CGGTCGGCAA GCTGGTGCTG TAG
|
|---|
| Protein sequence | MAKKNAIQDF SGEIGIAALV VAVVALMVLP LPTMLIDALL GLNITLSVVL LMVTMYIPSA
TSLSAFPSLL LFTTLLRLSL NIASTKSILL HADAGHIIES FGKLVVGGNL VVGLVVFLII
TTVQFIVIAK GSERVAEVGA RFTLDAMPGK QMSIDADLRA GHLSPEEARK RRALLAMESQ
LHGGMDGAMK FVKGDAIAGL VITLVNILAG IVIGITYHNM TAGEAANRFA VLSIGDAMVS
QIPSLLISVA AGVMITRVSD EEQAHKQSSL GMEIVRQLST SARAMFTASA LLMGFALVPG
FPSFLFVALA TLIFVFGYTL RNRAKEGDGD EGDALPALLR EGSKGKAPTI AEQAPSFTVP
VGVRLGAELA KGLDVPALDT AFQQGRHALA EALGLPFPGI AIWKADALQP DSYEVRVHDI
PGEPVAVPDG HLLIPDLPEA LRAQAVEAAG LPNHPAPHWI APAHVAQDAA LSATGQRVER
VIADHVVHVL RRSAHLFVGL QETQWMLERV TTDYPGLVAE AQKAVPAQRI ADVLRRLLEE
QVPIRNMRAI LESLVVWGPK EKDTLMLVEY VRGDLGRQIA HQATGGTRQM PAILLDLSVE
QTVRQAIKPT PAGNFLTLDP QQVEAIIMRL RGIMQGNPVE TPSALAIVTS MDIRRYVRRM
IEPHLQALNV YSFQELGGYV DLRPVGKLVL
|
|---|
| |