Gene RSp0833 details

Gene Information

• Locus tag: RSp0833
• Symbol: pehC
• ID: 1223140
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003296
• Strand: +
• Start bp: 1052058
• End bp: 1054100
• Gene Length: 2043 bp
• Protein Length: 680 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 637240693
• Product: polygalacturonase transmembrane protein
• Protein accession: NP_522394
• Protein GI: 17549054
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG5434] Endopolygalacturonase

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 7
• Fosmid unclonability p-value: 0.00798361
• Fosmid Hitchhiker: No
• Fosmid clonability: decreased coverage

Sequence

Gene sequence

ATGCCCAAAC AGAAACACTC CAGCGCGCGC CATGCCGGCC GACAGGCGCC GCACCGCCCG 
CAGTCGCCCG CGCGGCGCGC ATTCGTCATG TGGTCGGGCG CCTCGGCCGG GGCCGCGCTG 
CTCGGCACGC TGCCGGGCTG CGGCGGCGAT GGCGGCAGCA GTGCCACGGC CGCCACCGCC 
AGCCCCGCCG ACGCAACCGC GACCGTGACC ACGCGGGACG CGATCTGGGG CGAATCCGGT 
GCCGCCACGC GCATCGTCGC CTCGCTGCAA GGCGTGGCCC AATCGATGTT TCCCCGCCGC 
GACTTCGTGG TGACGGACTA CGGCGCCCAG CCTTGCGCCA TCGTCGACGC GGTCAACCCT 
TACACCGACG CCAGCAAATC GCCGCTCAGC GCGGGCGCCG ACAAGACGCC CGCGACCGGC 
GCCTTCGATG CGCGCGCGGC TTTCACCGCC GCCATCGCCG CCTGCAATGC GGCCGGGGGC 
GGCCGGGTGT TGGTGCCGGC CGGCAACTGG TACTGCGCCG GCCCGATCGT GCTGCTCAGC 
AACGTCAACT TCCACCTGAG CGCCGACTGC ACGATCTACT TCAGCCCCAA CCCGGACGAC 
TACGCCAAGG ACGGCCCGGT CGATTGCGGC GCCAACGGCA AGCTCTACTA CAGCCGCTGG 
CAGTCAAACG ATTGCCTGAA CTACGGCGCC CCCGTCTATG CGCGCAACCA GCGCAACATC 
GCGCTGACCG GGGAGGGCGA CAGCTCCACC CTCAACGGGC AGGCCATGAC GCCGTTCGCG 
GGCAGCGGCA ACACCAGCAC CTGCTGGTGG ACCTTCAAGG GCACCAAGGG CGAGTACGGC 
GCCGTCAACG CTTCCACGCC GTCGCAGGCG TACAGCAATC CGAACAACGT CGACCTGCGC 
ACGGCGGCAC CGGGCATCGC CGATGACCTC TACGCCAGGC TGACCGACCC GACCACGCCG 
TGGCAGCAGG ACCAGAACTA CCTGTCCGCG CTGTCCGAGG CCGGGGTGGC GGTGGCGCAG 
CGCATCTTCG GCAAGGGCCA CTACCTGCGG CCGTGCATGG TCGAATTCAT CGGCTGCACC 
AACGTGCTGA TGGAGGCTTA CCGCACCCAC GCCACGCCGT GCTGGCAGCA CCATCCGACC 
GACTGCGCCA ACGTGGTCAT CCGCGGCGTG ACGGTCGACA GCATCGGCCC CAACAACGAC 
GGCTTCGACC CCGATGCGTG CAGCAACGTG CTGTGCGAGG ACATGACCTT CAACACCGGC 
GATGACTGCA TCGCCATCAA GTCCGGCAAG AACCTCGACA CCGGCTACGG CCCGGCGCAG 
GACCACGTGA TCCGGAACTG CATCATGAAC AGCGGCCACG GCGGCATCAC GCTCGGCAGC 
GAGATGGGCG GCGGCGTGCA GCGGATCTAC GCGCGCAACC TGACGATGCG CAATGCGTTC 
TATGCGACCG ATCCGCTGAA CATCGCCATC CGCATCAAGA CCAACATGAA CCGCGGCGGC 
TATGTCCGGG ACTTCTACGT CGATGACGTG ACGCTGCCCA ACGGCGTCAG CCTCACCGGC 
GGCGGCTACG GTAGCGGCCT GCTGGCGGGC AGCCCCATCA ACAGCAGCGT GCCGCTGGGC 
GTGGCGACGG CCGCCAGCGC CAATCCGTCG GCATCGCGGG GTGGCCTCAT CACCTTCGAC 
TGCGACTACC AGCCGTCCAA GGACGCCATC CGCACGCGGC CCGCGCAGGT GCAGAACATC 
CACATCTCGA ACGTGCGCGC GTCCAACGCG ACGGTGGGCG GGACGACGGG GTCGTGCTTC 
CAGGCCATCG TCGCGCAGGG GCCGGTCGCC TTCGACTACA ACGGCCCGAC GCCCGCGCCG 
ACGGTCCCGC CCATCGCGGG CGTGACGATC ACCGACTGCG ATTTCGGCAG CCCGGTCGCC 
GCCGGCCCGG CCAGCGCGTC GACGCCGGGC CCGATCTACG CCTACAACGT CAGCGACATC 
ACGCTCACCA ACGTCCGGAT CGGCGCGCAG ATCTACAACA CTACCGTGAG CGACACGCGC 
TGA 

 

Protein sequence

MPKQKHSSAR HAGRQAPHRP QSPARRAFVM WSGASAGAAL LGTLPGCGGD GGSSATAATA 
SPADATATVT TRDAIWGESG AATRIVASLQ GVAQSMFPRR DFVVTDYGAQ PCAIVDAVNP 
YTDASKSPLS AGADKTPATG AFDARAAFTA AIAACNAAGG GRVLVPAGNW YCAGPIVLLS 
NVNFHLSADC TIYFSPNPDD YAKDGPVDCG ANGKLYYSRW QSNDCLNYGA PVYARNQRNI 
ALTGEGDSST LNGQAMTPFA GSGNTSTCWW TFKGTKGEYG AVNASTPSQA YSNPNNVDLR 
TAAPGIADDL YARLTDPTTP WQQDQNYLSA LSEAGVAVAQ RIFGKGHYLR PCMVEFIGCT 
NVLMEAYRTH ATPCWQHHPT DCANVVIRGV TVDSIGPNND GFDPDACSNV LCEDMTFNTG 
DDCIAIKSGK NLDTGYGPAQ DHVIRNCIMN SGHGGITLGS EMGGGVQRIY ARNLTMRNAF 
YATDPLNIAI RIKTNMNRGG YVRDFYVDDV TLPNGVSLTG GGYGSGLLAG SPINSSVPLG 
VATAASANPS ASRGGLITFD CDYQPSKDAI RTRPAQVQNI HISNVRASNA TVGGTTGSCF 
QAIVAQGPVA FDYNGPTPAP TVPPIAGVTI TDCDFGSPVA AGPASASTPG PIYAYNVSDI 
TLTNVRIGAQ IYNTTVSDTR