| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp0829 |
|---|
| Symbol | gudD2 |
|---|
| ID | 1223136 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | + |
|---|
| Start bp | 1047303 |
|---|
| End bp | 1048640 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637240689 |
|---|
| Product | glucarate dehydratase protein |
|---|
| Protein accession | NP_522390 |
|---|
| Protein GI | 17549050 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
|---|
| TIGRFAM ID | [TIGR03247] glucarate dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.267714 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACTGC AGCACATCGA GACCGGCGCC CGCGCGCAGA CGCCGCGCGT GACGCGGATG
CAGGTGATCC CGGTGGCGGG GCACGACAGC ATGCTGCTCA ACCTGTGCGG CGCGCATGCG
CCGTTCTTCA CGCGCAACCT GGTGATCCTC GCGGACAGCG CGGGCCGCAC CGGCGTGGGC
GAAGTGCCGG GCGGGGAGGG CATCCGCCGC GCGCTGGCCG GCCACGGCGA TGCCGCGCGC
CAGACGACCG TGCACGAGGT GACCTCCGCC TCGGAGGCCG CCGTGCTGCG CCAGCCGCAC
GAGATCAACC TGCGCATGGA CAACGTCCTC ACCGCGGTGG AGGCGGCGCT GCTCGACCTG
CTGGGCCAGC ACCTGGAGGT GCCGGTGGCC GAGCTGCTCG GCACCGGCCA GCAGCGTGAC
GCGGTGCCCA TGCTGGCCTA CCTGTTCTAC GTGGGCGAGC GTCGCAAGAC TGACTTGCCG
TACCTCGACG GCGCCGGCGC CGGCGCCGCC GACGGCTGGC TGCGCCTGCG CCACGAGGCC
GCCATGGCGC CGGCGCAGAT CGCCCGCCTG GCCGAGGCCG CCGCCGAGCG CTACGGCTTC
GCCGATTTCA AGCTCAAGGG CGGCGTGATG CGCGGCGCCG ACGAGATGGA GGCGATCGCC
GCCATCAAGG CCCGCTTCCC GCACGCCCGC GTGACGCTCG ACCCGAACGG CGCGTGGTCG
CTGGACGAGG CGATCGCGCT GTGCCGGGGG CAGGGCCACC TGCTGGCCTA CGCCGAAGAC
CCGTGCGGCC CCGAGGCCGG CTACTCGGGC CGCGAGATCA TGGCCGAGTT CAAGCGCGCC
ACCGGCGTGC CGACCGCCAC CAACATGATC GCCACCGACT GGCGCCAGCT GGGGCACGCG
GTGCCGCTGC AGGCGGTCGA TATCCCGCTG GCCGATCCGC ACTTCTGGAC GATGCAGGGC
TCGGCGCGGG TGGCCCAGCT GTGCAACGAC TGGGGCCTGA CCTGGGGCTC GCATTCCAAC
AACCATTTCG ATGTCTCGCT GGCGATGTTC ACGCACGTGG CCGCCGCCGC GCCCGGCCGC
ATCACCGCCA TCGATACGCA CTGGATCTGG CAGGAAGGCC AGGAGCGCCT GACGCGCGAG
CCGCTGCGCA TCGAGGGCGG CCAGGTGCGC GTGCCGCAGC AGCCGGGCCT GGGCATCGAG
CTCGACATGG ACCGCGTGAT GCAGGCCCAT GCGCTCTACC AGACGCTGGG CACCGGCGCG
CGCGACGATG CCATGGCCAT GCAATACCTC GTGCCGGGCT GGACCTACGA TCCGAAGCGC
CCGAGCCTGG CACACTGA
|
|---|
| Protein sequence | MTLQHIETGA RAQTPRVTRM QVIPVAGHDS MLLNLCGAHA PFFTRNLVIL ADSAGRTGVG
EVPGGEGIRR ALAGHGDAAR QTTVHEVTSA SEAAVLRQPH EINLRMDNVL TAVEAALLDL
LGQHLEVPVA ELLGTGQQRD AVPMLAYLFY VGERRKTDLP YLDGAGAGAA DGWLRLRHEA
AMAPAQIARL AEAAAERYGF ADFKLKGGVM RGADEMEAIA AIKARFPHAR VTLDPNGAWS
LDEAIALCRG QGHLLAYAED PCGPEAGYSG REIMAEFKRA TGVPTATNMI ATDWRQLGHA
VPLQAVDIPL ADPHFWTMQG SARVAQLCND WGLTWGSHSN NHFDVSLAMF THVAAAAPGR
ITAIDTHWIW QEGQERLTRE PLRIEGGQVR VPQQPGLGIE LDMDRVMQAH ALYQTLGTGA
RDDAMAMQYL VPGWTYDPKR PSLAH
|
|---|
| |