Gene RSp0678 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSp0678 
SymbolpdxH2 
ID1222985 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003296 
Strand- 
Start bp864318 
End bp864959 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content62% 
IMG OID637240538 
Productpyridoxamine 5'-phosphate oxidase 
Protein accessionNP_522239 
Protein GI17548899 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0259] Pyridoxamine-phosphate oxidase 
TIGRFAM ID[TIGR00558] pyridoxamine-phosphate oxidase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.595144 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.101223 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATGCGA CCGATATGGA TACGGAAGCG GCGTTCCGCA ACGATCACGA AACCATCGCT 
GGCGAAGACC CCTTCGCGAT GTTCGGCGAA TGGCTTGAAT TGGCGCACCG CAAGGAGATC 
AATGACGCCA ATGCCATGGC GCTGGCCACC GCCGATCCGG ACGGCTTGCC CAATGTGCGC 
ATGGTGCTGC TGAAGGGGTT CGACCGCGAG GGGTTCGTCT TTTACACCAA TACCGAATCC 
CAGAAGGGCG TCGAACTGGC GGAGAACATG CAGGCGGCAG CGGTCTTGCA TTGGAAATCG 
CTGCGCCGCC AGGTTCGCTT TCGGGGGACG GTCAACCGCG TCTCGGCGGA AGAGGCGGAT 
GCGTATTTTG TCTCCCGCGC CAGGGCCAGC CGGATCGGCG CCTGGGCCAG CAAACAATCA 
CGCCCGCTCG AAAACCGCAC GGCCCTGGCC AAGTCTGTCG CGACCGAAGC GGCGCGATTC 
GGGATCAGCG ACATACCGCG CCCCGCGTTC TGGACGGGGT TCCGAATCGT ACCGAACTGC 
ATCGAGTTCT GGATGGACAA GCCGTTCCGC CTGCATGACC GTCTGGTATT CAAGCGCTCT 
CATTCCGGGG AGCCCTGGTC AGCGCTGAAA CTCTACCCGT AA
 
Protein sequence
MNATDMDTEA AFRNDHETIA GEDPFAMFGE WLELAHRKEI NDANAMALAT ADPDGLPNVR 
MVLLKGFDRE GFVFYTNTES QKGVELAENM QAAAVLHWKS LRRQVRFRGT VNRVSAEEAD 
AYFVSRARAS RIGAWASKQS RPLENRTALA KSVATEAARF GISDIPRPAF WTGFRIVPNC 
IEFWMDKPFR LHDRLVFKRS HSGEPWSALK LYP