| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp0312 |
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| Symbol | mexD |
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| ID | 1222444 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | - |
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| Start bp | 407966 |
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| End bp | 411115 |
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| Gene Length | 3150 bp |
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| Protein Length | 1049 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637240172 |
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| Product | multidrug efflux system transmembrane protein |
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| Protein accession | NP_521873 |
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| Protein GI | 17548533 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.712007 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0691835 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCACAGT TCTTCATCCG GCGCCCGGTC TTCGCCTGGG TCATCGCCCT GTTCATCATC
CTGCTGGGCG CGATCGCCAT TCCGAAGCTG CCGATCGCGC GCTACCCCTC GGTCGCCCCG
CCGACCGTCA ATCTCTCCGC GACATACCCC GGCGCCACGC CGCAGACCAT GAACGATGGG
GTGATCAGCC TCATCGAACG CGAGCTGTCG AGCGTCAAGA ACCTGCTGTA TTTCGAGTCC
TCGTCCGACA CGTCGGGCTC GGCGTCGATC GTCGCCACCT TCAAGCCGGG CACGGACCCG
GCCATGGCGC AGGTCGACGT GCAGAACAAG CTCAAGGCCA TCGAGCCGCG CCTGCCGCAG
GTGGTGCGCC AGAACGGCTT GACCGTGGAG TCGGCATCGT CCGGCTTCCT GATGATCATC
GGCCTGCAAT CCGATGACGG CCGCTTCGAC GAAACCGCGT TGAGCGACTA CATGGCGCGC
AACGTCGTCG AGGAACTGCG GCGCATCGAG GGCGTCGGCC GCGTGCAGTT GTTCGGCGCC
GAGCAGGCGA TGCGCATCTG GGTCGATCCG GCCAAGCTGA TTGCCTATGG CCTGTCGATG
AACGACCTGT CGGCGGCCAT CAGCCAGCAG AACGCACAGA TCGCGCCCGG CAGCGTCGGC
GCGTCTCCGG CACTGCCGGC CCAGCGCGTG ACGGTGCCGC TCACGGTGCA GGGACAGCTG
ACCACGCCGG AGCAGTTCGC CGCCATCGTG CTGCGCGCCA ACGCCAACGG CTCCAAGGTC
GTCATGGGCG ACGTCGCGCG GGTCGAACTC GGCGCGCAGT CCTATGGCTT CATCAACCGC
GAGAACGGCA AGGCCGCCAC CGCCGCTGCC GTGCAGCTCG CGCCGGGCGC CAACGCGGTA
CGCACCGCCG AAGGCGTGCA GGCGCGCATG GCGGAACTGA GCAGGACCAT GCCGGCGGGC
ATGAGCTACT CGATTCCCTT CAACACCGCC CCCTTCGTCA AGATCTCGAT CGAGAAGGTC
ATCCAGACGC TGATCGAAGC GATGGTGCTG GTGTTCCTGG TGATGTACCT GTTCCTGCAG
AACGTGCGCT ACACGCTGAT CCCGGCCATC GTGGCGCCGA TCGCGCTGCT CGGCACGTTC
ACCATCATGC TGGCCTCGGG CTTCTCGATC AACGTGCTAA CCATGTTCGG CATGGTGCTG
GCGATCGGCA TCATCGTGGA CGACGCCATC GTGGTGGTGG AGAACGTCGA ACGCCTCATG
GCCCAGGAGG GGCTGTCGCC CAGGGACGCC ACGATCAAGG CGATGAAGGA GATCACCGGC
GCGGTGATCG GCATCACCCT GGTGCTGACC GCGGTGTTCA TTCCGATGGC CCTGGCCAGC
GGCTCGGTCG GCGTGATCTA CCAGCAGTTC ACGCTGTCGA TGGCGGTATC CATCGTGTTC
TCGGCCTTCC TCGCGCTCAC CCTGACGCCG GCGCTGTGCG CGACGCTGCT CAAGCCGGTC
GATCCGGCCC ACCATGAGAA GCGCGGCGTC TTCGGCTGGT TCAACCGCCG TTTCGACCGG
ATCACGCAAG GCTATGCAGC GCGCGTCGGG AAGCTGGTGA CGCGCACGGG CCGCGTGATG
CTGGTGTTCG GCGCAATCGC CGCGGTCCTG GCCCTGGCCT TCAGGCAACT GCCGTCGTCC
TTCCTGCCGG AGGAGGACCA GGGCTACTTC ATGACCACCT TCCAGTTGCC CGCCGACGCG
ACGGCCGAAC GCACGCTGGA CGTGGTCAAG GCATTCGAGC GGCATGTGGC CTCCCGTGCG
TCGATCCAGT CCAACATGTC CATCGTGGGC TTCGGCTTCT CGGGGTCGGG CTCGAACGCG
GCGATGGCCT TCACCATGCT GAAAGACTGG GACGCGCGCA ACGGCGCCAC GGCCCAGAAT
GAAATGCGCC TGGCCCAGCA GGCCATGGCC GGCGCCACGG AAGGCACGGT GATGAGTCTG
CTGCCGCCCG CCATCGACGA ACTGGGTACC AGCTCGGGCT TCACGTTGCG CCTGCAGGAT
CGCGCCAACC AGGGCGATGC CGCGCTCAAG GCGGCCGAGA CCAAACTGCT CGAGCTGGCG
GCGCAGAGCA GGATCGTCAG CGGCGTCTAC CCCGACGGCC TGCCGGCCGG CACCAGCATC
CGCCTTGACA TCGACCGGCA GAAGGCCGAA GCGCTGGGCG TGGCGTTCAC CAGCATCAGC
GAAACGCTGT CCACGGCGAT CGGTTCGCTG TACGTCAACG ACTTCCCCAA TGCCGGGCGC
ATGCAGCAGG TCATCATCCA GGCCGACGCG CCGGCGCGCA TGCAGATCGA CGACGTGCTC
AAGCTGTATG TACGCAACGC CGGCGGCGGC ATGGTGCCGT TGTCCGAAGT GGTGAGACCG
GTCTGGAGCG AGACGCCGCT GCAGCTCGTG CGCTTCCAGG GTTTTCCGGC CGCGCGCATC
TCCGGCAACG CCGCGCCCGG CGCCTCCAGC GGTGCGGCCA TGGCCGAGAT GGAGCGCCTG
GCCGCGCAGT TGCCGCCCGG CTTCGCCATT GCCTGGACCG GCCAGTCGCT GCAGGAGCGC
CAGTCAGCCG CGCAGGCGCC GATGCTGATG GCGCTGTCGA TGCTGGTGGT GTTCCTGGTG
CTCGCCGCGC TGTACGAGAG CTGGGCCATT CCGCTGTCGG TCATGCTGGT GGTGCCCCTC
GGCCTGCTCG GCGCGGTGCT CGCGGTGCTG CTGCGCGGCA TGCCCAACGA CGTGTTCTTC
AAGGTCGGCA TGATCACCGT GATCGGCCTG TCGGCCAAGA ACGCCATCCT GATTGTCGAG
TTCGCCAAGC AGTTGCGCGA GCAGGGCAAG GGGCTGGTGG AGTCGGCCGT GACCGCGGCC
CGGCTGCGCC TGCGCCCGAT CCTGATGACC TCGCTGGCCT TCGGCCTGGG CGTGGTGCCG
CTGATGATCG CCATGGGCGC CAGCGCCGAG ACCCAGCACG CCATCGGCAC CGGCGTGTTC
GGCGGCATGG TCAGCGCGAC CGTGCTGGCC ATCTTCTTCG TCCCCGTTTT CTTCGTGTTC
GTGATGGGCC TGCAGGAACG CTTCGAGGCG TGGCGGGCAT CCCGCCAGGC ACCGCCTCCC
CCGGTCCCCC ATCAACCACA AGAGGGCTGA
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| Protein sequence | MPQFFIRRPV FAWVIALFII LLGAIAIPKL PIARYPSVAP PTVNLSATYP GATPQTMNDG
VISLIERELS SVKNLLYFES SSDTSGSASI VATFKPGTDP AMAQVDVQNK LKAIEPRLPQ
VVRQNGLTVE SASSGFLMII GLQSDDGRFD ETALSDYMAR NVVEELRRIE GVGRVQLFGA
EQAMRIWVDP AKLIAYGLSM NDLSAAISQQ NAQIAPGSVG ASPALPAQRV TVPLTVQGQL
TTPEQFAAIV LRANANGSKV VMGDVARVEL GAQSYGFINR ENGKAATAAA VQLAPGANAV
RTAEGVQARM AELSRTMPAG MSYSIPFNTA PFVKISIEKV IQTLIEAMVL VFLVMYLFLQ
NVRYTLIPAI VAPIALLGTF TIMLASGFSI NVLTMFGMVL AIGIIVDDAI VVVENVERLM
AQEGLSPRDA TIKAMKEITG AVIGITLVLT AVFIPMALAS GSVGVIYQQF TLSMAVSIVF
SAFLALTLTP ALCATLLKPV DPAHHEKRGV FGWFNRRFDR ITQGYAARVG KLVTRTGRVM
LVFGAIAAVL ALAFRQLPSS FLPEEDQGYF MTTFQLPADA TAERTLDVVK AFERHVASRA
SIQSNMSIVG FGFSGSGSNA AMAFTMLKDW DARNGATAQN EMRLAQQAMA GATEGTVMSL
LPPAIDELGT SSGFTLRLQD RANQGDAALK AAETKLLELA AQSRIVSGVY PDGLPAGTSI
RLDIDRQKAE ALGVAFTSIS ETLSTAIGSL YVNDFPNAGR MQQVIIQADA PARMQIDDVL
KLYVRNAGGG MVPLSEVVRP VWSETPLQLV RFQGFPAARI SGNAAPGASS GAAMAEMERL
AAQLPPGFAI AWTGQSLQER QSAAQAPMLM ALSMLVVFLV LAALYESWAI PLSVMLVVPL
GLLGAVLAVL LRGMPNDVFF KVGMITVIGL SAKNAILIVE FAKQLREQGK GLVESAVTAA
RLRLRPILMT SLAFGLGVVP LMIAMGASAE TQHAIGTGVF GGMVSATVLA IFFVPVFFVF
VMGLQERFEA WRASRQAPPP PVPHQPQEG
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