| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp0283 |
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| Symbol | dinF |
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| ID | 1222415 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | + |
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| Start bp | 366465 |
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| End bp | 367838 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637240143 |
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| Product | DNA-damage-inducible F transmembrane protein |
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| Protein accession | NP_521844 |
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| Protein GI | 17548504 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00354836 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.290631 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGCACT CGTCCGCCAT TCCGGTCGCA CCCGGCCGGC CCATGCAGTG GCACCGGCGC
GTGCTCGCGC TGGCGTTTCC GATCGTGCTG GCCAATCTGA CCCAGCCGCT GCTGTCGGCG
GTCGATACGG CGGTCGCGGG GCATTTGCCT GGGCCGGAAT ACCTGGGCGG CGTGGCGCTC
GGGGGCGTGT TCTTCAATTT TGTGTTCTGG GGGTTCGGCT TCCTGCGCAT GGGCACCACT
GGCCTGGTGG CGCAGGCGCA CGGCGCGGGC GATGCGCGGG GGCTGCGGGC CAACGTCGCG
CGTGCGCTGC TGCTGGCGCT GGGCATCGGC CTGGCCCTGC TGGTGCTGCA GGGGCCGGCC
ATCCGCTTCA CCCTGGCGCT GCTCGGGGCC AGCGATGCCG TGACGCGCAT GGCCGGGATC
TATTGCCATG CGCGCATCTG GTCGGCGCCG TTCGCGCTGG CCAACTATGT GGTGCTGGGC
ACGCTGCTGG GGCGCCAGCA GGTGCGGCTT GCCCTGCTGC TGCAGGTGTT CATCAATCTG
GTCAATATGG TGGCGGTGCT CGGGCTCGTG CTGGGGGCCG GCATGGGCGT GGGCGGGATC
GGCGCGGCGA CGGCCGTCGC CGACATCCTG GGCTTCGCGC TCGGCATGGC GCTGCTGCGG
CTGCTGAGCC GTGACGGCAT GCGCGGCCTG CCGCCGATGA CGCGCGCCGA ACTGCTGGCG
CGCGACGCCT GGCGCCGGCT GATGGGGCTG AACGCCGATA TCTTCCTGCG CACGGCCTGT
CTGCTGGCCG CCTTCGGCTG GTTTGCCCAC GCGGGCGCGC AGCAGGGCGA CGTCATCCTC
GCGGCCAATG CGCTGCTGCT CAATTTCCTG ACCTTCATGG CCTACGGGCT CGATGGCTTT
GCCCATGCGG CCGAGGCGCT GGTGGGGGCG GCGCTGGGCG CGCGCGACGG CCGCGCGCTG
CGCTCGGCGA TCCGGGTGTC GACGCTGTGG TCGGTGCTGG GCGCGGCGCT GTTCTCGCTG
GTGTATGCCG TAGCGGGCAG CGTCATCATC GGCTGGCTGA CGGATCAGCC GGCCGTGCGG
GAGGCCGCGC GCCACGCGCT GGTGTGGGCG GCCCTGCTGC CGGTGGTGTC GGTGTGGGGC
TTCCAGTTCG ACGGTGTGTT CATCGGCGCC ACCCGCACGC GTGAACTGCT GCTGACGATG
GCGTTTTCGG CCCTCGTGTT CGGGCTGCTG GCCGTCGCGC TGCTGCCGCG CTGGGGCAAT
CCGGGGCTGT GGTTCGCCAT GCTGGCCTTC ATGGCGCTGC GCGGCATGAC GCTGGGCATG
CTGTTGCCGC GCGTGCTGAA CGCCGCGCCC GCGGCATCCC CGCAGGCCGC ATGA
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| Protein sequence | MEHSSAIPVA PGRPMQWHRR VLALAFPIVL ANLTQPLLSA VDTAVAGHLP GPEYLGGVAL
GGVFFNFVFW GFGFLRMGTT GLVAQAHGAG DARGLRANVA RALLLALGIG LALLVLQGPA
IRFTLALLGA SDAVTRMAGI YCHARIWSAP FALANYVVLG TLLGRQQVRL ALLLQVFINL
VNMVAVLGLV LGAGMGVGGI GAATAVADIL GFALGMALLR LLSRDGMRGL PPMTRAELLA
RDAWRRLMGL NADIFLRTAC LLAAFGWFAH AGAQQGDVIL AANALLLNFL TFMAYGLDGF
AHAAEALVGA ALGARDGRAL RSAIRVSTLW SVLGAALFSL VYAVAGSVII GWLTDQPAVR
EAARHALVWA ALLPVVSVWG FQFDGVFIGA TRTRELLLTM AFSALVFGLL AVALLPRWGN
PGLWFAMLAF MALRGMTLGM LLPRVLNAAP AASPQAA
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