Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSp0246 |
Symbol | ahpF |
ID | 1222377 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | + |
Start bp | 319171 |
End bp | 320745 |
Gene Length | 1575 bp |
Protein Length | 524 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637240105 |
Product | alkyl hydroperoxide reductase subunit F |
Protein accession | NP_521807 |
Protein GI | 17548467 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG3634] Alkyl hydroperoxide reductase, large subunit |
TIGRFAM ID | [TIGR03140] alkyl hydroperoxide reductase, F subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0118696 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0355514 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGGACG CTGATGTCAA GGCCCAACTG AAAGCCTACC TCGAACGCCT TGTGCAGCCC ATCGAACTGG TTGCCTCGAT CGATGACAGC GAAGGCTCCC GCGACATGAT GGACCTGCTG CGTGATGTCG CCGCGCAGTC CGGCATGATC GCGCTCACCG AACAGCGCGA CGACGCCGAG CGCAAGCCGT CGTTCCTGAT CCGCCGCACC GGCACCGATG TCGGTGTCCG TTTCGCGGCC ATCCCGACCG GCCACGAGTT CACCTCGCTC GTGCTCGCGC TGCTGCAGGT GGGCGGCTAC GCCCCCAAGC TCGATGACGA TGTCATCGAA CAGATTCGCA ACATCGAAGG CGATTTCCGC TTCGAGACCT ATATGTCCCT GACGTGCCAG AACTGCCCGG ACGTGGTCCA GGCGCTGAAC GTCATGTCGG TGATCAACCC GCGCATCCAG CACGTCGCCA TCGACGGCGC GCTGTTCCAG GACGAAGTGG AAGCGCGCAA GATCATGGCC GTGCCGACCC TCTTCCTGAA CGGGGAAGTC CTCGGCCAGG GCCGCATGGG CGTGGAAGAG ATCCTCGCCA AGATCGACAC CGGCGCCGCC GCCCGCGACG CCGAGAAGCT CAACGCCCGC GCACCGTACG ACGTGCTGAT CGTCGGCGGC GGGCCGGCCG GCGCGGCGGC GGCCGTGTAT GCCGCGCGCA AGGGCGTGCG CACCGGCGTG GTGGCTGAGC GCTTCGGCGG CCAGGTGCTC GACACGATGA GCATCGAGAA CTTCATCTCC GTGCCGGAGA CCGAAGGGCC GAAGTTCGCC GCCGCGCTGG AGCAGCACGT GCGCCAGTAC AACGTCGACA TCATGAACGT GCAGCGCGCC GTCAAGCTCA CGCCGGCCGA CGAGCCGGGC GGCCTCGCCG AGGTGACGCT GGCCAACGGC GCGGTGCTCA AGGGCCGCTC GATCATCGTG TCGACCGGCG CGCGCTGGCG CAACGTCAAC GTGCCGGGCG AGCAGGAATA CCGCAACCGC GGCGTGGCGT ACTGCCCGCA CTGCGATGGT CCGCTGTTCA AGGGCAAGCG CGTGGCCGTG ATCGGCGGCG GCAACTCCGG CGTGGAAGCC GCGATCGACC TGGCGGGCAT CGTCAGCCAT GTCACGCTGC TCGAGTTCGG CGACCAGCTC AAGGCCGATG CCGTGCTGGT GCGCAAGCTG GAAAGCCTGC CCAACGCGAC CATCCTCACC AACGCCCAGA CCACCGAGAT CACCGGTAAC GGCGAAAAGG TCAACGGCCT GCGCTACAGG CACCGCACCA ACGGCGCCGA GCACGACGTC GCGCTGGAGG GCGTGTTCGT GCAGATCGGC CTGGTGCCCA ACACCGAGTG GCTCGACGGC GTGGTGGAGC GCAACCGCTT CGGCGAGATC ATCGTCGATG CACGTGGCCA CACCAGCGTG CCGGGCGTGT TCGCGGCGGG CGATTCGACC ACGGTGCCGT TCAAGCAGAT CATCATCGCC ACGGGCGAGG GTGCCAAGGC CGCATTGTCC GCCTTCGATC ACCTGATCCG GGTGCCGCTG GCCGAAGCCG CCTGA
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Protein sequence | MLDADVKAQL KAYLERLVQP IELVASIDDS EGSRDMMDLL RDVAAQSGMI ALTEQRDDAE RKPSFLIRRT GTDVGVRFAA IPTGHEFTSL VLALLQVGGY APKLDDDVIE QIRNIEGDFR FETYMSLTCQ NCPDVVQALN VMSVINPRIQ HVAIDGALFQ DEVEARKIMA VPTLFLNGEV LGQGRMGVEE ILAKIDTGAA ARDAEKLNAR APYDVLIVGG GPAGAAAAVY AARKGVRTGV VAERFGGQVL DTMSIENFIS VPETEGPKFA AALEQHVRQY NVDIMNVQRA VKLTPADEPG GLAEVTLANG AVLKGRSIIV STGARWRNVN VPGEQEYRNR GVAYCPHCDG PLFKGKRVAV IGGGNSGVEA AIDLAGIVSH VTLLEFGDQL KADAVLVRKL ESLPNATILT NAQTTEITGN GEKVNGLRYR HRTNGAEHDV ALEGVFVQIG LVPNTEWLDG VVERNRFGEI IVDARGHTSV PGVFAAGDST TVPFKQIIIA TGEGAKAALS AFDHLIRVPL AEAA
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