Gene RSp0245 details

Gene Information

• Locus tag: RSp0245
• Symbol: ahpC1
• ID: 1222376
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003296
• Strand: +
• Start bp: 318491
• End bp: 319054
• Gene Length: 564 bp
• Protein Length: 187 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 637240104
• Product: alkyl hydroperoxide reductase subunit C
• Protein accession: NP_521806
• Protein GI: 17548466
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0450] Peroxiredoxin
• TIGRFAM ID: [TIGR03137] peroxiredoxin

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.00041911
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: 10
• Fosmid unclonability p-value: 0.0512525
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCGCTGA TCAACACCCA AGTGCAGCCT TTCAAGGCAC AAGCTTTCCA CAACGGCAAG 
TTCGTCGAAG TCACCGAGCA GAACCTCAAG GGCAAGTGGT CCGTGCTGAT CTTCATGCCG 
GCCGCCTTCA CCTTCAACTG CCCGACCGAA GTCGAAGACG CTGCTGACAA CTACGCCGAA 
TTCCAGAAGG CCGGCGCCGA GGTCTACATC GTCACCACCG ACACGCACTT CTCGCACAAG 
GTGTGGCACG AAACCTCGCC GGCCGTCGGC AAGGCCCAGT TCCCGCTGGT GGGCGATCCG 
ACCCACGTGC TGACCAACGC CTTCGGCGTG CACATCCCCG AAGAAGGCCT GGCCCTGCGC 
GGCACCTTCG TGATCAACCC GGAAGGCGTG GTCAAGACCT CGGAAGTGCA CGACAACGCC 
ATCGCGCGTG ACGTGAAGGA AACGCTGCGC AAGCTCAAGG CCGCCCAGTA CGTCGCCAGC 
AACCCCGGCC AGGTCTGCCC GGCCAAGTGG AACGAAGGCG CCAAGACGCT CAAGCCGTCG 
CTGGACCTGG TCGGCAAGAT CTAA 

 

Protein sequence

MSLINTQVQP FKAQAFHNGK FVEVTEQNLK GKWSVLIFMP AAFTFNCPTE VEDAADNYAE 
FQKAGAEVYI VTTDTHFSHK VWHETSPAVG KAQFPLVGDP THVLTNAFGV HIPEEGLALR 
GTFVINPEGV VKTSEVHDNA IARDVKETLR KLKAAQYVAS NPGQVCPAKW NEGAKTLKPS 
LDLVGKI