Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSp0138 |
Symbol | pme |
ID | 1222541 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | - |
Start bp | 160019 |
End bp | 161338 |
Gene Length | 1320 bp |
Protein Length | 439 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637239997 |
Product | putative pectinesterase |
Protein accession | NP_521699 |
Protein GI | 17548359 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG4677] Pectin methylesterase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.356938 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGGCACGA CCCCGATCCG TGGCGCTGCC GTTCCATACC TGCGCAATGC CATCGCATTC CATCAGTTGC ACATCCCTAT CAAACAAAAA AGCCTGACAC CAGGCATCCT TTTGACCGGA AAAATAACGA TGCAATCCAA AACCCTGTAC TTGAAAGCCA CCGCATTGCT GGGAGGCTGC ACCGTGTTTG CCGCAACGGC GCTCGCCGTG ACAAGCACCG CCACCCGCCC TCAGCTCAGC AGTGCCGACG CGCGCACCTA CACCATCGCG AAATACCTGG CGAGCTTCGG GACGATCGGC TCGCTGACCA CGGACAATTG GGACCCCACC GGCGGCGTCG GCGCGGTGAG CGGCTTCCGG GCCAACTACG CGGTCGCGGC GGACGGAACG GCGCAATACA AGACGGTGCA GGCCGCGATC GACGCGGCAG TCAACGCCGG CGGCGTGGCG CGCAGGTACA TCAGCGTGAA GGCCGGCATC TACAACGAAC TGGTCTGCGT GCCCGAGTCG GCGCCGCCGA TCACGCTGTA TGGCCTCGAT GCGAACGCCG GCAACACGCA GATCGTCTAC AACAACGCGA ACCCGACGCC CGCCTCGGGC GCCAAGACAA ACCCCTGCAT GGGCACCAGC AGCAATGCCA CGGTCGGCAC GCTGCGCAGC GCCACCGCCA TGGTGCGGGC ATCGGACTTC CACGCCCGCA ACCTGACCTT CAAGAACAGC TACGTGGAAG GCACCTATGC CGACAACAAC CAGTCCGCGG TAGCGCTTGC CGTGCGCGGC GACAAGGCCA TCCTCGAAAA CGTCTCGGTC ATCGGCAACC AGGACACGCT GTTCGTCGGC GCCACGAGCA CCACCACGGT GATCCGCGCC TACTTCAAGA ACAGCTTCAT CCAGGGCGAT ACGGATTTCA TCTTTGGTGC CGGCACCGCC GTCTTCCATG GCTGCACGAT CCAGTACACC GCGGCACGCC TGGGCGCCAA GGCCGCCAGC TACATCTTTG CGCCGAGCAC GGCCCCGGGC AATCCGTACG GGTTCCTCGC CATCAACAGC ACCTTCAACG CCACCGGCAA TCCGCCGAAC AACAGCCTGC ACCTGGGGCG CGCGTGGGAT CAGAGCGTGA GCGGCACCTC GGCCTACATC AACGGCAGCT CGCCCAATGG GCAGGTGGTG ATCCGCGATT CGTCGCTGGG TGCGCTGATC CGGCTGGCCG ATCCGTGGGG CCCATCGACG GCGGGGCGGC CCTACTGTTC GGCCAACTGC GCGTATTCGG CGAATCGGTT CTTTGAGTAC AACAACACGG GGGCGGGTAG CGGCAACTGA
|
Protein sequence | MGTTPIRGAA VPYLRNAIAF HQLHIPIKQK SLTPGILLTG KITMQSKTLY LKATALLGGC TVFAATALAV TSTATRPQLS SADARTYTIA KYLASFGTIG SLTTDNWDPT GGVGAVSGFR ANYAVAADGT AQYKTVQAAI DAAVNAGGVA RRYISVKAGI YNELVCVPES APPITLYGLD ANAGNTQIVY NNANPTPASG AKTNPCMGTS SNATVGTLRS ATAMVRASDF HARNLTFKNS YVEGTYADNN QSAVALAVRG DKAILENVSV IGNQDTLFVG ATSTTTVIRA YFKNSFIQGD TDFIFGAGTA VFHGCTIQYT AARLGAKAAS YIFAPSTAPG NPYGFLAINS TFNATGNPPN NSLHLGRAWD QSVSGTSAYI NGSSPNGQVV IRDSSLGALI RLADPWGPST AGRPYCSANC AYSANRFFEY NNTGAGSGN
|
| |