Gene RSp0138 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSp0138 
Symbolpme 
ID1222541 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003296 
Strand
Start bp160019 
End bp161338 
Gene Length1320 bp 
Protein Length439 aa 
Translation table11 
GC content64% 
IMG OID637239997 
Productputative pectinesterase 
Protein accessionNP_521699 
Protein GI17548359 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG4677] Pectin methylesterase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.356938 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCACGA CCCCGATCCG TGGCGCTGCC GTTCCATACC TGCGCAATGC CATCGCATTC 
CATCAGTTGC ACATCCCTAT CAAACAAAAA AGCCTGACAC CAGGCATCCT TTTGACCGGA
AAAATAACGA TGCAATCCAA AACCCTGTAC TTGAAAGCCA CCGCATTGCT GGGAGGCTGC
ACCGTGTTTG CCGCAACGGC GCTCGCCGTG ACAAGCACCG CCACCCGCCC TCAGCTCAGC
AGTGCCGACG CGCGCACCTA CACCATCGCG AAATACCTGG CGAGCTTCGG GACGATCGGC
TCGCTGACCA CGGACAATTG GGACCCCACC GGCGGCGTCG GCGCGGTGAG CGGCTTCCGG
GCCAACTACG CGGTCGCGGC GGACGGAACG GCGCAATACA AGACGGTGCA GGCCGCGATC
GACGCGGCAG TCAACGCCGG CGGCGTGGCG CGCAGGTACA TCAGCGTGAA GGCCGGCATC
TACAACGAAC TGGTCTGCGT GCCCGAGTCG GCGCCGCCGA TCACGCTGTA TGGCCTCGAT
GCGAACGCCG GCAACACGCA GATCGTCTAC AACAACGCGA ACCCGACGCC CGCCTCGGGC
GCCAAGACAA ACCCCTGCAT GGGCACCAGC AGCAATGCCA CGGTCGGCAC GCTGCGCAGC
GCCACCGCCA TGGTGCGGGC ATCGGACTTC CACGCCCGCA ACCTGACCTT CAAGAACAGC
TACGTGGAAG GCACCTATGC CGACAACAAC CAGTCCGCGG TAGCGCTTGC CGTGCGCGGC
GACAAGGCCA TCCTCGAAAA CGTCTCGGTC ATCGGCAACC AGGACACGCT GTTCGTCGGC
GCCACGAGCA CCACCACGGT GATCCGCGCC TACTTCAAGA ACAGCTTCAT CCAGGGCGAT
ACGGATTTCA TCTTTGGTGC CGGCACCGCC GTCTTCCATG GCTGCACGAT CCAGTACACC
GCGGCACGCC TGGGCGCCAA GGCCGCCAGC TACATCTTTG CGCCGAGCAC GGCCCCGGGC
AATCCGTACG GGTTCCTCGC CATCAACAGC ACCTTCAACG CCACCGGCAA TCCGCCGAAC
AACAGCCTGC ACCTGGGGCG CGCGTGGGAT CAGAGCGTGA GCGGCACCTC GGCCTACATC
AACGGCAGCT CGCCCAATGG GCAGGTGGTG ATCCGCGATT CGTCGCTGGG TGCGCTGATC
CGGCTGGCCG ATCCGTGGGG CCCATCGACG GCGGGGCGGC CCTACTGTTC GGCCAACTGC
GCGTATTCGG CGAATCGGTT CTTTGAGTAC AACAACACGG GGGCGGGTAG CGGCAACTGA
 
Protein sequence
MGTTPIRGAA VPYLRNAIAF HQLHIPIKQK SLTPGILLTG KITMQSKTLY LKATALLGGC 
TVFAATALAV TSTATRPQLS SADARTYTIA KYLASFGTIG SLTTDNWDPT GGVGAVSGFR
ANYAVAADGT AQYKTVQAAI DAAVNAGGVA RRYISVKAGI YNELVCVPES APPITLYGLD
ANAGNTQIVY NNANPTPASG AKTNPCMGTS SNATVGTLRS ATAMVRASDF HARNLTFKNS
YVEGTYADNN QSAVALAVRG DKAILENVSV IGNQDTLFVG ATSTTTVIRA YFKNSFIQGD
TDFIFGAGTA VFHGCTIQYT AARLGAKAAS YIFAPSTAPG NPYGFLAINS TFNATGNPPN
NSLHLGRAWD QSVSGTSAYI NGSSPNGQVV IRDSSLGALI RLADPWGPST AGRPYCSANC
AYSANRFFEY NNTGAGSGN